Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1140g00001 ATGGAAAATGCTAATGGTCCTAAGAGCAACAATCTTCAAGGAAATTCTGATGAGGAAATATTTCAAGTGAACGAAGAGGTGGAGGTGCGGCGTGTAGAGGAGGGGTTCCTAGGATCATGGCACCCTGGGATAGTTATCAAGTGTGGAAAGGTGAAGTGCTTTGTCAGATACAAGAATGTTCTAAAAAGTGACGGTTCGGATTATCTTGTGACTGCAGTGAGGGTTTCAAAAGCATCGGAATCTTCAAAGTATAGCATGCGGGGGTTCATTCGACCACCGCCACCTTGGATTGAGTTTGGGAGATTTAACCTTAACTATGGTTTGTGCGTGGATGTAAACTGTCAGGGAGCTTGGTGGGAAGGAGTGATATTTGATCAGTTCGATGGGATGCTGAAAAGGAGCGTGTTTTTTCCAGATTTGGGTGATGAAATGCAGATTGAAATTCATCAACTGCGGATTACTCAGGACTGGAATGAAGTTACACGACAATGGGAACTAAGAGGAAACTGGGTGTTTCTTGAATTGCTGGAGGAGTATCATGAGAATGAATCATTTGTTGGAGTTTCAGCTAAACAAATGTGGTATGATGTACTGGTACAAAAGAGATTTGGCATGAGGGGAGAGTGGGCATATAATGAGAAAGAATTGTACAGGGAAGCGGTGCTAGGTGTAGTTGATGACTACTTAAGTCTTAGAGTGAACAAAGTTTTCTCAGTTTTAGACTTGCCACCAGAGCAGGAATCAGTTGAACCAATGGCTAATATTGACTTGAACATGACCTTGTCTGATAGAGATAATTTTGTCCAGAAAGAACCTGCTCCTCTTGTTCAAGAGGTTTTACCTGAGTTTGAAATAGAAATTGACCTTGAAGCTGCTCCTGAAGTAGTTTCTGGTGAGAGATGTGAAAGCTCATCAAGGGATTCAAAGGCCAAAATATCTGAGAGTCAAAGCAATAGATTGCCTCCACAAGGATCAGGGAAGAGGGTGACAAAGGCGTCTGCCTCTAGTCTTTTACCTCTGGATAAACCTCTAACTATTTTGTCTTGGTTGATGGACAACAAGATGGTGTTTCCAAGATCTACCGTATATTATTACAATGAAAAAGCATGGCACCATGCAGTTTCGAGTTGGACTAGAGGGAAAGTAACTCGCAGTGGAATCAAGTGTTACTGTTGTAACATAGTTTACAGTTTTGTTGGCTTTGAAAATCATGCTAGTGGAGTCAATACCTGCACACCATCTGCTTGTATTTTTTTGAAAGATGGTAAATCACTCTTAGAATGCCAAATGGAAATAATGCAAAATCGGGTGACGGGAGAAACTAGCGAAAAACCATGCCTTAATTTCCCTCTAGAAGAGAATGACTTGATTTGTTCGCTTTGCCTCTATGGCGGTGAACTTATTTTATGTGATCAATGTCCATCTTCATTTCACATGACGTGTCTTGGGTTGGAGCATATCCCTGATGGTCAATGGCTTTGCCCACAATGCCGTTGCGGTATTTGTCGCCAAAGCAAACTAGACGAAGATGAGGATGGCCATGCTGCCCTTACTTGCGTACAGTGTGAACATAAATTCCATGTTAGGTGCCTGGAAAATGGAGGCATAGATTTATCAAGATGTTCAGAAAACTGGTTCTGTGGAAAAAGCTGCGAAAAGATACACAATGGCCTTCATGATCTATTAGGAAAGCCAGTTTTAGTGGGTGTGGACAATCTAACATGGACATTGGTGAAGTTTATTGAGCCTGAGTGTGATGATGTTGGTAGAATAAGACATGACAACTCAGTAGCAGAAAGTTACAGCAAACTCAATCTTGCTCTTGCGGTGATGCATGAATGTTTTGAGTCCCTAAAACAAAGTTTATCTAGCAGAGATATCATTGAAGATGTTATATTCGGCAGAAGGTCAGAGCTAAGGCGATTAAATTTCCAGGGTTTCTATACTGTACTACTTGAGAGAAATGAAGAAGTGGTTTCTGTGGCAACTGTTAGGGTCCACGGGGAGAAGGTGGCAGAAGTACCTTTTGTTGGTACAAGATTACAGTACCGTCGACATGGATTTTGTCGCATTCTGATGAGTGGTCTTGAACAGTTGCTCATGCAAATAGGTGTGGGGAGGCTTGTTTTGCCGGCTGTTCCTAGTACGCTGAAGACATGGACTGACTCTTTTGGTTTTGCAAAGATGACCGTTTCTGAGAGGTCTAAATTTCTGGACAACACCTTCTTAAATTTTGAGGGTAGCATCATGTGCCATAAGCTGTTGATGACGATTCCAGCTCCATATTCTGGCTTGTTAATACCTAATTTTGAGAAGTCACAATCCAGATTTCATGTTTTACCTGAAAATACCGTTGACCTCAATCAGTCTATTTCAGTATCAGAAGGAGGGATGATATATCACCAAACGGGGAATACTTGTGCAGGCAACAACAATGGCGACAACAATGATTTTGTCAATTGTGTTACTGTTCCAATCAACAACATGGAGAAAGAAGTTCCTAGTGATAAACAGTATCTTAATGGAAGCAGCTCACAGTTCTTTCATGAAAAAGGTGAAGAATACAACAGTGAGTATACTGGAAAGAAAGTAAGGTATCTGCATAAGGGGAGCTTCTGA 2619 0.4147 MENANGPKSNNLQGNSDEEIFQVNEEVEVRRVEEGFLGSWHPGIVIKCGKVKCFVRYKNVLKSDGSDYLVTAVRVSKASESSKYSMRGFIRPPPPWIEFGRFNLNYGLCVDVNCQGAWWEGVIFDQFDGMLKRSVFFPDLGDEMQIEIHQLRITQDWNEVTRQWELRGNWVFLELLEEYHENESFVGVSAKQMWYDVLVQKRFGMRGEWAYNEKELYREAVLGVVDDYLSLRVNKVFSVLDLPPEQESVEPMANIDLNMTLSDRDNFVQKEPAPLVQEVLPEFEIEIDLEAAPEVVSGERCESSSRDSKAKISESQSNRLPPQGSGKRVTKASASSLLPLDKPLTILSWLMDNKMVFPRSTVYYYNEKAWHHAVSSWTRGKVTRSGIKCYCCNIVYSFVGFENHASGVNTCTPSACIFLKDGKSLLECQMEIMQNRVTGETSEKPCLNFPLEENDLICSLCLYGGELILCDQCPSSFHMTCLGLEHIPDGQWLCPQCRCGICRQSKLDEDEDGHAALTCVQCEHKFHVRCLENGGIDLSRCSENWFCGKSCEKIHNGLHDLLGKPVLVGVDNLTWTLVKFIEPECDDVGRIRHDNSVAESYSKLNLALAVMHECFESLKQSLSSRDIIEDVIFGRRSELRRLNFQGFYTVLLERNEEVVSVATVRVHGEKVAEVPFVGTRLQYRRHGFCRILMSGLEQLLMQIGVGRLVLPAVPSTLKTWTDSFGFAKMTVSERSKFLDNTFLNFEGSIMCHKLLMTIPAPYSGLLIPNFEKSQSRFHVLPENTVDLNQSISVSEGGMIYHQTGNTCAGNNNGDNNDFVNCVTVPINNMEKEVPSDKQYLNGSSSQFFHEKGEEYNSEYTGKKVRYLHKGSF 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1140g00001 872 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 589 761 IPR000182 GO:0016747
Vium1140g00001 872 Gene3D - 573 730 - -
Vium1140g00001 872 MobiDBLite consensus disorder prediction 314 332 - -
Vium1140g00001 872 Pfam Agenet domain 25 95 IPR008395 -
Vium1140g00001 872 SUPERFAMILY FYVE/PHD zinc finger 443 498 IPR011011 -
Vium1140g00001 872 MobiDBLite consensus disorder prediction 296 332 - -
Vium1140g00001 872 Pfam PHD-finger 457 499 IPR019787 -
Vium1140g00001 872 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 449 499 IPR013083 -
Vium1140g00001 872 ProSiteProfiles Zinc finger PHD-type profile. 455 500 IPR019787 -
Vium1140g00001 872 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 554 IPR013083 -
Vium1140g00001 872 SMART agenet_At_2 19 98 IPR014002 -
Vium1140g00001 872 SMART agenet_At_2 102 159 IPR014002 -
Vium1140g00001 872 PANTHER PHD FINGER PROTEIN 12 248 833 IPR042163 GO:0003714|GO:0045892
Vium1140g00001 872 CDD NAT_SF 650 710 - -
Vium1140g00001 872 SMART PHD_3 457 498 IPR001965 -
Vium1140g00001 872 Pfam Tify domain binding domain 380 431 IPR032308 -
Vium1140g00001 872 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 609 728 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1140g00001 Vium-Chr1140 13679 23688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1140g00001 318 700 PHD Transcription Factor Family AT5G58610 46.717 3.18e-104 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium1140g00001 Agenet 1.7e-14 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1140g00001 - - var:108323857 1748.79