Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium113g00006 ATGGAAGGAGATCAAATTCAAGAATTCAAACACGCGTGCAAGTTCTGCGGCAAGTGCTTCCCTTGTGGCAGATCCTTGGGGGGCCACATGAGGTCTCATATCACCAACTTGTCGTCGGAGGAAAAAGAAAAGCTTCCGACGAGGAAGCTTTTTTCGTCGTCTCTCAACAATGATGGAGACAAAGATTCCGAAGCTGCTGCAACCAACGCTGGCTATGGCCTCCGAGAGAACCCCAAGAAGACTTGGAGAATCTCGGATCATTCGAGCGAAGACGCTTTGGTGTTTGACAAGTTCTGCAAAGAGTGTGGCAAAGCGTTCCACTCTTGGAAGGCCTTGTTTGGTCACATGAAATGCCACTCCGAGAAAGAGAGAGCTTCTGACAGCTTGGAAGATCAAGATTCGTGGACTAATGCTAAGGTGGTCATGGATAGTCAGTCTGATAACGAAGCAACTGCTCCAAATAAGAGAAGAAGGTCCAAGAGAAGAACAAGGTACACGGTTGCTTCTGCCGCAGCAACTTCTTCGGTTGTGTCTTTTGCCAATCCTTCCTCTTCTCTCTCTGAAGTTGAGCAGGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTCAGTAGGGATGTGAGTCCTTGGAGTGGTCCTCATTCTGTTGCCGAGTCCTCTGACAACAACTCTGCTTATTTCGAAGCTCGATCTTCGGTTCGAACTAATCTGGTTGCCAAATTTGATGGCAGCACTGACTTCACGCCTAACACGGCAAGAATGATCAAGCAAAGTGATAATAAGTGGGAGGTTGGGAATTCGGAAAATCCCAGCTCAATCAGAGGAAAGAGTTCGCAGCGTTTGACTACTACTGCTGCTACTGTGGAGACTACTGAAAATGGATTTGGAGCGAACAAAAGCGGAGTTTCTAGTAAAGGATATGAAAAGGTCAACAACTCTGAGCTTCAATATGTGTCTGCATTGGAGGATTCAGAAGGGGAACGTGGGAGGAGCAGAGTCAATGAACCAGAATCAATTTTATCAAAGTCCGCTGCTACCGGCAACAAGTACAATTCGATCAAGACAAAGCTTATCGGCTCTGAATTGAAGTCAAACAAGAACTGGGCGGACAAGGCTTCAGAACCTGAATCAAGCAAGAACTCTCACAAGAGAGGCAAGTTTGAGTGTACCACTTGCAATAAAACCTTCCACTCATACCAAGCTCTTGGAGGCCATAGAGCTAGCCACAAGAAGATCAAGGGATGCTTTGCTTCGAAAAATGAGAGCAGCGAAAACAGCATTGAAACTGATCTCTCTCCTGATCCAATAACAACCGAACACAAGCTCGTGAACAGCACTGACCGTGAGTATCTTGGGGAACACCAACAGGGTGCCGGTTTTCATGATGAGGTGGAAACAGTTACTGAATCCAAGAAGAGCAAGGGGCACGAGTGCCCAATTTGCCTCAAAGTTTTTCCATCAGGCCAAGCCTTGGGTGGCCACAAGAGATCTCATATGACTGGTGGGTCTGAGAGTAGAAACTTTCAAACAGTTGTACTCCAGGAACCAGTGGCAGAAATCAGGGACTTCCTTGATCTTAATCTTCCCGCTGCTACCGAGGAAGAAAGCAATAGTCATGCTGACTCTAACAGACCCTGGTGGGTAGTACAAGACAACCACAAGCAGGAGGCACTGGTAGGCCTGATCTTATAG 1692 0.4704 MEGDQIQEFKHACKFCGKCFPCGRSLGGHMRSHITNLSSEEKEKLPTRKLFSSSLNNDGDKDSEAAATNAGYGLRENPKKTWRISDHSSEDALVFDKFCKECGKAFHSWKALFGHMKCHSEKERASDSLEDQDSWTNAKVVMDSQSDNEATAPNKRRRSKRRTRYTVASAAATSSVVSFANPSSSLSEVEQEQEEVAMSLMMLSRDVSPWSGPHSVAESSDNNSAYFEARSSVRTNLVAKFDGSTDFTPNTARMIKQSDNKWEVGNSENPSSIRGKSSQRLTTTAATVETTENGFGANKSGVSSKGYEKVNNSELQYVSALEDSEGERGRSRVNEPESILSKSAATGNKYNSIKTKLIGSELKSNKNWADKASEPESSKNSHKRGKFECTTCNKTFHSYQALGGHRASHKKIKGCFASKNESSENSIETDLSPDPITTEHKLVNSTDREYLGEHQQGAGFHDEVETVTESKKSKGHECPICLKVFPSGQALGGHKRSHMTGGSESRNFQTVVLQEPVAEIRDFLDLNLPAATEEESNSHADSNRPWWVVQDNHKQEALVGLIL 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium113g00006 563 SUPERFAMILY beta-beta-alpha zinc fingers 8 35 IPR036236 -
Vium113g00006 563 Gene3D Classic Zinc Finger 384 498 - -
Vium113g00006 563 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Vium113g00006 563 Pfam C2H2-type zinc finger 99 121 - -
Vium113g00006 563 Pfam C2H2-type zinc finger 11 33 - -
Vium113g00006 563 Pfam C2H2-type zinc finger 387 411 - -
Vium113g00006 563 Pfam C2H2-type zinc finger 476 499 - -
Vium113g00006 563 MobiDBLite consensus disorder prediction 53 72 - -
Vium113g00006 563 MobiDBLite consensus disorder prediction 262 281 - -
Vium113g00006 563 ProSitePatterns Zinc finger C2H2 type domain signature. 478 498 IPR013087 -
Vium113g00006 563 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 547 - -
Vium113g00006 563 SUPERFAMILY beta-beta-alpha zinc fingers 98 409 IPR036236 -
Vium113g00006 563 ProSitePatterns Zinc finger C2H2 type domain signature. 389 409 IPR013087 -
Vium113g00006 563 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Vium113g00006 563 ProSiteProfiles Zinc finger C2H2 type domain profile. 11 33 IPR013087 -
Vium113g00006 563 ProSiteProfiles Zinc finger C2H2 type domain profile. 476 498 IPR013087 -
Vium113g00006 563 SMART c2h2final6 97 119 IPR013087 -
Vium113g00006 563 SMART c2h2final6 11 33 IPR013087 -
Vium113g00006 563 SMART c2h2final6 387 409 IPR013087 -
Vium113g00006 563 SMART c2h2final6 476 498 IPR013087 -
Vium113g00006 563 MobiDBLite consensus disorder prediction 140 166 - -
Vium113g00006 563 ProSiteProfiles Zinc finger C2H2 type domain profile. 387 414 IPR013087 -
Vium113g00006 563 ProSitePatterns Zinc finger C2H2 type domain signature. 13 33 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium113g00006 Vium-Chr113 54918 57331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium113g00006 4 534 C2H2 Transcription Factor Family AT1G26610 34.539 1.86e-65 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium113g00006 zf-C2H2_6 2.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium113g00006 - - gmx:102669916 874.389