Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11397g00001 ATNTCCCATTGGTGTTTCCGCTGCAACAAATTTGTCAGAGTATGGAGACAGGAAATGCCCATGTGTCCAGAATGTGACAGTGGATTCGTCGAAGAGATCGATTCTTCCGGTCGCCCCGTCCATGCAGAACCGCGCCGCCGTAGGTTCCCCGCCGCGGCTGCAATGTACATGATCGGCCACCGTTCCGGTAACTCCAACCAAATTCCCCGTTCCTCTCACCATCAACATTGCAGAACCGCCAACGGCGACCCGTCTCCGATCAACCCGGTTATCATGCTCCGCGGAGAGGGATCAAGGCACGAGCGTGGCTCCAGCTTCGACCTTTTCTACGACGATGGCGCCGGTACGGGCCTCCGACCACTCCCTCCGAGGATGTCAGAGTTTCTCCTCGGAACAGGCTTCGACCGCGTGATGGACCAACTTTCCAACGTGGAGTCTAACTCCGGGTCTGGGAGGCACGACCAGCACCACGCGCCGGCGTCTAAAGCTGTCGTGGATACCATGCCGGAGATTGAGATAAACGCATCCCATATGGTGACTGAGTCACATTGCGCGGTCTGCAAGGAGCCTTTTGAGCTTTGCACCAGAGCGAGAGAAATGCCATGCAAACACTTATACCATCCAGAATGCATCTTACCGTGGCTCGCAATTCGGAACTCCTGCCCTGTGTGCCGCAAACAGTTGCCTGTTGAGAACGAACGTGAGGGGTTGGAGCGTGTGGAGGAGGAGGAAGAGAACAACGTGGGGTTGACGATTTGGCGGTTACCGGGCGGAGGGTTTGCAGTGGGAAGGTTGGGGAGAAGAGAGGGTGAGAGAGAGGTTAACGTTCCTCTTGTGTACACGGAAGTGGATGGTGGGTTCAACTTTAACAACCTTGTTATGGGGGAACCCAGAAGGATTTCATGGTCGGTTTCGGAGTCTCGAGGGAGGAGAAGAGGTGGCACGTTTAGAAGAATGTTTAACGGTTTGTTTAGTTGCTTGAGAGGTGGTGGGGTTGGGCCTCAACGTTCTTCTAGCTCTGGTTCTTCGAGAAGCGCGACGAGTACCAGTGTTAGGGCTTCGCGTCCTAACATGGGTCCTTCTTCCTCTACGCGTAGATCTTGGTCAATGGATGTCAACGGTGGAACCAGACCATGGTAA 1140 0.5474 XSHWCFRCNKFVRVWRQEMPMCPECDSGFVEEIDSSGRPVHAEPRRRRFPAAAAMYMIGHRSGNSNQIPRSSHHQHCRTANGDPSPINPVIMLRGEGSRHERGSSFDLFYDDGAGTGLRPLPPRMSEFLLGTGFDRVMDQLSNVESNSGSGRHDQHHAPASKAVVDTMPEIEINASHMVTESHCAVCKEPFELCTRAREMPCKHLYHPECILPWLAIRNSCPVCRKQLPVENEREGLERVEEEEENNVGLTIWRLPGGGFAVGRLGRREGEREVNVPLVYTEVDGGFNFNNLVMGEPRRISWSVSESRGRRRGGTFRRMFNGLFSCLRGGGVGPQRSSSSGSSRSATSTSVRASRPNMGPSSSTRRSWSMDVNGGTRPW 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11397g00001 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 94 229 - -
Vium11397g00001 379 MobiDBLite consensus disorder prediction 61 82 - -
Vium11397g00001 379 MobiDBLite consensus disorder prediction 332 371 - -
Vium11397g00001 379 SUPERFAMILY RING/U-box 164 230 - -
Vium11397g00001 379 MobiDBLite consensus disorder prediction 331 379 - -
Vium11397g00001 379 FunFam E3 ubiquitin-protein ligase RING1-like 145 231 - -
Vium11397g00001 379 ProSiteProfiles Zinc finger RING-type profile. 184 225 IPR001841 -
Vium11397g00001 379 Pfam Protein of unknown function (DUF1117) 248 355 IPR010543 -
Vium11397g00001 379 MobiDBLite consensus disorder prediction 61 91 - -
Vium11397g00001 379 Pfam zinc-ribbon 2 33 IPR039525 GO:0061630
Vium11397g00001 379 Pfam Ring finger domain 183 225 IPR001841 -
Vium11397g00001 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 231 IPR013083 -
Vium11397g00001 379 SMART ring_2 184 224 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11397g00001 Vium-Chr11397 17745 18884 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11397g00001 118 233 C3H Transcription Factor Family AT5G01980 37.931 2.81e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11397g00001 K11982 - gmx:100789228 522.316