Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11390g00001 ATGGAGAACTATCAGTACCCCTCCTACCCTGACTCCGGCGACTCCTCGCCGCGTTCCAGGGAGATCGACTTCGAGAATCCGCCGCCCTGGGACGACCAGCAGACCCAGAACTACAAGGCCAAGTTCATGTGCAGCTACGGCGGCAAGATCCAGCCCCGAACCCATGACAACCAGCTCTCCTACGTCGGCGGCGACACCAAGATTCTCGCCGTCGACCGCGCCATCAAGTTCCCCGCTTTCCTTTCCAAGCTCGCGGCTCTCTGCGACGCCACGCCGCAGGACCTCACCTTCAAGTACCAACTCCCTGGCGAAGACCTCGACGCCCTGATCTCCGTCACCACCGACGACGACCTGGAACACATGATGCACGAGTACGACCGTCTCTATCGCCCTAACTCCAAACCTGTTAGGATGAGACTCTTTCTCTTCACGCTTTCCTCAAACCCTAATTCCTCGTTCTCTTCGGATCGTGATCGCTTCGTCGATGCTCTTAACTCTGCTCCAATTCCTCCGCAACCTGACCCCATCAAAACCCCTCCCGTTACTCCTTCCAATGTCGATTACCTCTTCGGTCTCGACAAGGCCGTTGCTCCTCCCACTCTCCCTCCTTCCTTCGCGGCCGTCAAGTTCCACGATCCCGCGCCCGAGCCAGTCGCGCCGCAGCCGGAGTATCAGGTTCGCGGTGGAATCTCCGTTTCTGATCGCGTCGTTGGATCGGATCCGAGTGCGAACTCGATCGAGATTCAGAGACAGTTGCAGCAGGAGATGCAGCGTTTGCAGATTGCTGAGAATGAATATCGGAGGAGGAGTGAGGATGGTTTCGCCGGTGGCTATGCCGCTGCGGGAGGTGATTATTACATGCAGAAGATACCGGAGAAGGTTCCGCCTGCTAATGCGCCCCATCCCGCCGGGTACTGGCAGGAGAAGCAGTTTTCCGGCGAGGGTTTTCAGACGACAGTCACGACGGCTACCGGAGGTGCTGATCAGCAGGTCTATGTTATCCCAGCGCCAGGGACTTTCTACCACGCGCCGGTGGTGAGGCCTCCGGCGGCGCAGGGCTACTACGCAGTGCAGAGAATGGGGTCTGAGGGTTTCCGTGAGCAGGCTGTGTTCGGCGGCGTTGCTCAGACGAAGACTGCGTTTTCGTCGGCAGGGCCGGCTCAGCCGGTTAAGGCTTCCGGGTATGCTGAAGGCTACGGCGTTGTGAGGCCTGCTGGGGTGCCGGATAATGCTGCGTACACGCAGGTGGCGTATGATAGTGCGAGTGGGAGGCAGGTTTACTATACTGCGCAGGGAGGGGTGGTGCACGCGCCGACGCAGTACCAAGGCGTTCCGGTGGGGTCGGATGTTAGGCCTGTTGGGGTTTCGGTGGGCCAGGATGGTAAGGTTGTTAACAAGGTTAACCAAGGTTCTGTGTGA 1419 0.5899 MENYQYPSYPDSGDSSPRSREIDFENPPPWDDQQTQNYKAKFMCSYGGKIQPRTHDNQLSYVGGDTKILAVDRAIKFPAFLSKLAALCDATPQDLTFKYQLPGEDLDALISVTTDDDLEHMMHEYDRLYRPNSKPVRMRLFLFTLSSNPNSSFSSDRDRFVDALNSAPIPPQPDPIKTPPVTPSNVDYLFGLDKAVAPPTLPPSFAAVKFHDPAPEPVAPQPEYQVRGGISVSDRVVGSDPSANSIEIQRQLQQEMQRLQIAENEYRRRSEDGFAGGYAAAGGDYYMQKIPEKVPPANAPHPAGYWQEKQFSGEGFQTTVTTATGGADQQVYVIPAPGTFYHAPVVRPPAAQGYYAVQRMGSEGFREQAVFGGVAQTKTAFSSAGPAQPVKASGYAEGYGVVRPAGVPDNAAYTQVAYDSASGRQVYYTAQGGVVHAPTQYQGVPVGSDVRPVGVSVGQDGKVVNKVNQGSV 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11390g00001 472 Coils Coil 245 272 - -
Vium11390g00001 472 MobiDBLite consensus disorder prediction 1 15 - -
Vium11390g00001 472 Pfam PB1 domain 55 143 IPR000270 GO:0005515
Vium11390g00001 472 CDD PB1_UP2 43 143 - -
Vium11390g00001 472 MobiDBLite consensus disorder prediction 1 33 - -
Vium11390g00001 472 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 59 145 - -
Vium11390g00001 472 PANTHER OS05G0427100 PROTEIN-RELATED 9 352 - -
Vium11390g00001 472 SMART PB1_new 54 145 IPR000270 GO:0005515
Vium11390g00001 472 Gene3D - 60 144 - -
Vium11390g00001 472 SUPERFAMILY CAD & PB1 domains 55 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11390g00001 Vium-Chr11390 9569 11088 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11390g00001 38 166 MAP Kinase Kinase Kinase AT5G57610 42.647 1.82e-26 111