Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium11386g00001 | ATGGTAGCCGTTCTGAAGAGACAGAGAGAAAACGAATCCGAGGAGTTCCAGTGCAAGACGTGTAACCGGAAATTCTCGTCGTTCCAAGCGCTGGGAGGTCACCGGGCGAGCCACAAGAAGCCCAAGTTGGAGGGAGAAGAGGGCAAGGATCTGAGCCGGAAGCCCAAAACCCACGAGTGTTCGATTTGCGGGCAGGGATTCTCGTTGGGCCAGGCCCTGGGAGGGCACATGAGAAAACACAGGGGAGGCTTGAACGAAGGGTTTTCTTCAGTTATTGCGGAGGCACCGCTTCTGAAACGTTCGAATAGCAGCAAGAGGGTGATGTGCTTGGAGTTGGATCTCAACCTAACGCCGTTGGAAAATGACTTGAAGTTGTTGTTCGGAAACAAGGCTCCTACGGTGCATCTTTCCTTGTAG | 417 | 0.5324 | MVAVLKRQRENESEEFQCKTCNRKFSSFQALGGHRASHKKPKLEGEEGKDLSRKPKTHECSICGQGFSLGQALGGHMRKHRGGLNEGFSSVIAEAPLLKRSNSSKRVMCLELDLNLTPLENDLKLLFGNKAPTVHLSL | 138 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium11386g00001 | 138 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 16 | 43 | IPR013087 | - | |
Vium11386g00001 | 138 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 60 | 80 | IPR013087 | - | |
Vium11386g00001 | 138 | Gene3D | Classic Zinc Finger | 11 | 36 | - | - | |
Vium11386g00001 | 138 | Pfam | C2H2-type zinc finger | 16 | 41 | - | - | |
Vium11386g00001 | 138 | Pfam | C2H2-type zinc finger | 58 | 81 | - | - | |
Vium11386g00001 | 138 | SMART | c2h2final6 | 16 | 38 | IPR013087 | - | |
Vium11386g00001 | 138 | SMART | c2h2final6 | 58 | 80 | IPR013087 | - | |
Vium11386g00001 | 138 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 8 | 122 | - | - | |
Vium11386g00001 | 138 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 18 | 38 | IPR013087 | - | |
Vium11386g00001 | 138 | Gene3D | Classic Zinc Finger | 46 | 110 | - | - | |
Vium11386g00001 | 138 | MobiDBLite | consensus disorder prediction | 31 | 57 | - | - | |
Vium11386g00001 | 138 | SUPERFAMILY | beta-beta-alpha zinc fingers | 16 | 80 | IPR036236 | - | |
Vium11386g00001 | 138 | FunFam | Zinc finger protein | 54 | 81 | - | - | |
Vium11386g00001 | 138 | MobiDBLite | consensus disorder prediction | 37 | 57 | - | - | |
Vium11386g00001 | 138 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 58 | 82 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium11386g00001 | Vium-Chr11386 | 20551 | 21280 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium11386g00001 | 13 | 128 | C2H2 Transcription Factor Family | AT2G37430 | 59.677 | 6.65e-43 | 138 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vium11386g00001 | zf-C2H2_6 | 4.5e-09 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium11386g00001 | - | - | vra:106771374 | 262.307 |