Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11386g00001 ATGGTAGCCGTTCTGAAGAGACAGAGAGAAAACGAATCCGAGGAGTTCCAGTGCAAGACGTGTAACCGGAAATTCTCGTCGTTCCAAGCGCTGGGAGGTCACCGGGCGAGCCACAAGAAGCCCAAGTTGGAGGGAGAAGAGGGCAAGGATCTGAGCCGGAAGCCCAAAACCCACGAGTGTTCGATTTGCGGGCAGGGATTCTCGTTGGGCCAGGCCCTGGGAGGGCACATGAGAAAACACAGGGGAGGCTTGAACGAAGGGTTTTCTTCAGTTATTGCGGAGGCACCGCTTCTGAAACGTTCGAATAGCAGCAAGAGGGTGATGTGCTTGGAGTTGGATCTCAACCTAACGCCGTTGGAAAATGACTTGAAGTTGTTGTTCGGAAACAAGGCTCCTACGGTGCATCTTTCCTTGTAG 417 0.5324 MVAVLKRQRENESEEFQCKTCNRKFSSFQALGGHRASHKKPKLEGEEGKDLSRKPKTHECSICGQGFSLGQALGGHMRKHRGGLNEGFSSVIAEAPLLKRSNSSKRVMCLELDLNLTPLENDLKLLFGNKAPTVHLSL 138
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium11386g00001 138 ProSiteProfiles Zinc finger C2H2 type domain profile. 16 43 IPR013087 -
Vium11386g00001 138 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Vium11386g00001 138 Gene3D Classic Zinc Finger 11 36 - -
Vium11386g00001 138 Pfam C2H2-type zinc finger 16 41 - -
Vium11386g00001 138 Pfam C2H2-type zinc finger 58 81 - -
Vium11386g00001 138 SMART c2h2final6 16 38 IPR013087 -
Vium11386g00001 138 SMART c2h2final6 58 80 IPR013087 -
Vium11386g00001 138 PANTHER ZINC FINGER PROTEIN ZAT5 8 122 - -
Vium11386g00001 138 ProSitePatterns Zinc finger C2H2 type domain signature. 18 38 IPR013087 -
Vium11386g00001 138 Gene3D Classic Zinc Finger 46 110 - -
Vium11386g00001 138 MobiDBLite consensus disorder prediction 31 57 - -
Vium11386g00001 138 SUPERFAMILY beta-beta-alpha zinc fingers 16 80 IPR036236 -
Vium11386g00001 138 FunFam Zinc finger protein 54 81 - -
Vium11386g00001 138 MobiDBLite consensus disorder prediction 37 57 - -
Vium11386g00001 138 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 82 IPR013087 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium11386g00001 Vium-Chr11386 20551 21280 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11386g00001 13 128 C2H2 Transcription Factor Family AT2G37430 59.677 6.65e-43 138
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium11386g00001 zf-C2H2_6 4.5e-09 CL0361
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11386g00001 - - vra:106771374 262.307