Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1137g00001 ATGAAAGCCCTGTACAGAGGCTCTCTCTTTCTCATATTCTCCTTCACCTTGCTTTTTACTGGGACACCTTCTTCTGCACTTTCCACCAGAGACCCTTCTCAGCAACTCCTCTCCTTCAAAGCTTCTCTCTCCAACCCATCCCTGTTACCCAACTGGCTCCCCAACCAGAACACCTGTTCCTTCACCGGTATCACCTGCAACCAGACCCACCTCACTTCCATAGACCTCACCTCCATACCTCTCAGCACCAACTTCTCCATTGTAGCAACCTACCTCCTCACCCTCGACCACCTTCAGTCTCTCTCCCTCAAATCCACCAACCTTACAGGCCCTCCCACCGTTCCTCTTTCTCATTCCAAGTGCAGCTCCTCCCTATCCTCCATAGATCTGTCCCAGAACACTCTCTCCGGTTCCCTTAATGACATGTCCTTTCTTGCTTCCTGTTCAAACCTCCAATCTCTCAACCTTTCTAGTAACCTTCTCGAGTTCAACTCCTCCCACTGGAAACTCACCCTCCGCGTAGCTGACCTCTCCAACAACAAGATTTCTGGTCCCGGCATCGTCCTCTGGCTTCTCAACCCCGACATCGAACACCTGGCGCTCAAAGGTAACAAAATCACCGGAGATGTCGACTTCTCAGGTTCCACTTCTCTACAGCACTTGGACCTTTCCTCCAACAACTTTTCCGTTTCTATTCCTTCCTTGGGCGACTGTTCCTCCCTTAAATACTTGGACCTCTCTGCCAACAAATACTTTGGCGACATTGCTACCACTCTCTCACCTTGCAAGGCTCTCCTCTACCTCAACTTGTCCAGTAACCAGTTCACTGGTCTTGTTCCTTCCCTCCCTCTTGGTTCTCTCCAGTTCGTCTATCTCGCCGCCAACCACTTCCATGGCCTGATTCCTCCTGCACTGGCGGACCTCTGCTCCACTCTCGTACAGCTGGATCTCTCTTCCAACAATCTCACCGGTGACCTCCCAGGCCCCTTTGGCGCTTGCTCTTCCCTCCAATCCTTGGACATCTCAAGCAACCTCTTCACCGGCGCTTTGCCGATGGAGGTATTGACTCAAATGGGCAGTCTGAGGGAGCTTGCGGTAGCCTTCAACTTCTTCGGCGGTCCTCTACCCGTGTCGCTGTCGAAGCTTTCCAGTTTGGAATTGCTGGATCTGAGTTCCAACAACTTCAGCGGGCCAATCCCTGGAAGTCTGTGCGGAGATGCTGGGAATAACTTAAAGGAACTTTACCTGCAGAATAACCGGTTCACGGGTTTTATTCCTCCCATGCTCAGCAACTGTTCCAACCTTGTTGCCTTGGACTTGAGTTTCAACTTTCTGACAGGGACCATCCCTTCAAGCCTAGGGTCTCTCTCGAAACTCCGGGACTTGATTATCTGGCTGAACCAGCTCCATGGAGAGATACCTCAAGAGCTGATGTATATGAAGAGCCTGGAGAATCTTATCTTGGATTTCAACGAGTTGAGTGGGAACATTCCCTCTGGCCTCGTCAACTGCACCAAGCTCAATTGGATCTCCCTCTCCAACAACAGGCTTAGCGGCGAGATACCAGCCTGGATTGGGAAGCTTTCCAATCTGGCCATACTCAAACTCAGTAATAACTCCTTCTCTGGCCGGATCCCCCCTGAGCTTGGCGATTGCACTAGTCTTATATGGTTGGATCTGAATACTAATTCCCTCACAGGGCCCATTCCGCCTGAACTGTCCAAGCAATCCGGGAATATTGCCGTGAATTTCATCAATGGGAAGACTTATGTGTACATAAAGAATGATGGGAGTAAAGAATGTCATGGAGCAGGAAACTTGCTGGAGTTTGCTGGTATCAGTCAGCAGCAGCTCAACAGGATTTCCACCAAGAACCCCTGCAATTTCACCAGGGTTTATGGAGGTAAGTTGCAGCCAACGTTTAATCATAATGGTTCTATGATATTTTTGGATATCTCCCACAACATGTTGTCAGGCAGTATTCCAAAGGAATTTGGGGTCATGTACTATTTGACCATTCTCAATCTGGGCCACAATAATGTGTCTGGGAGCATTCCTCAGGAGCTTGGGAAGATGAAGAATCTTAACATTCTTGATCTCTCTAACAATAGACTCGAAGGGCAAATTCCGCAGAGCCTTACGGGGCTCTCCTTGCTCACTGAGATTGACTTGTCCAACAACATGCTCTCGGGAACGATTCCTGAGACGGGTCAATTTGATACTTTCCCTGCTGCAAGGTTTCAGAACAACTCTGATCTCTGTGGTGTTCCTCTGTCTCCTTGTGGATCGGACCCGACAAACAGTCCGAGTGCACAGCATATGAAGTCTCACAGGAGGCAGACTTCTTTAGTTGGGAGTGTGGCCATGGGATTACTATTCTCCCTCTTCTGCATCTTTGGTTTGATCATAATTGCCATTGAGACCAGAAAGAGGAGGAAGAAGAAAGAGGCAGCCCTTGAGGCCTACATGGATGGTAATTCGCATTCGGGTCCAGCCAATGTGAGCTGGAAGCACACGAGTACTCGTGAAGCTCTTAGCATAAACCTTGCAACTTTTGAGAAACCCCTCCGAAAGCTTACTTTTGCAGACCTTCTTGACGCCACCAATGGCTTTCACAATGACAGTCTCATTGGCTCCGGTGGGTTTGGTGATGTGTACAAGGCTCAGTTGAAGGACGGAAGTGTTGTTGCTATCAAGAAGCTGATTCATGTCAGCGGACAAGGGGACAGAGAGTTCACTGCTGAAATGGAGACTATAGGAAAAATTAAGCACAGGAACCTTGTTCCCTTGCTGGGATACTGCAAAGTTGGGGAGGAGAGGCTCCTGGTTTATGAGTATATGAAATACGGGAGCTTAGAGGATGTTCTCCATGATCAGAAGAAAGCTGGGATAAAGCTGAACTGGTCAATTAGAAGGAAAATTGCCATTGGAGCTGCTAGGGGATTGGCTTTTCTTCACCACAATTGTATCCCTCACATCATTCATAGAGACATGAAGTCAAGCAATGTTTTACTTGATGAAAACCTGGAAGCCAGGGTGTCTGATTTTGGAATGGCTAGGCTTATGAGTGCTATGGATACACATTTGAGTGTGAGCACCCTGGCGGGCACCCCGGGGTATGTTCCTCCCGAGTACTACCAGAGTTTCAGATGCTCCACTAAAGGTGATGTCTACAGTTACGGTGTGGTTTTGCTGGAGCTGCTAACTGGGAAAAGGCCAACGGATTCGGCTGATTTTGGTGACAATAATCTTGTTGGATGGGTTAAACAACATGCGAAGCTGAAAATAAGTGATATTTTTGATCAGGAGCTCATGAAGGAAGACCCCAATCTGGAGATGGAGCTTTTGCAGCACCTGAAGATTGCGTGTTCATGTTTGGATGATAGGCCATGGAGACGTCCCACCATGATTCAAGTTATGGCAATGTTCAAGCAGATTCAGGTAGGATCTGGGATTGATTCTCAGTCAACTATAGCCACCGATGAAGAAGGTTTCAATGCAGTTGAAATGGTGGAGATGAGCATTAAAGAAGCTCCTGAATTGAGCAAACATTAG 3555 0.483 MKALYRGSLFLIFSFTLLFTGTPSSALSTRDPSQQLLSFKASLSNPSLLPNWLPNQNTCSFTGITCNQTHLTSIDLTSIPLSTNFSIVATYLLTLDHLQSLSLKSTNLTGPPTVPLSHSKCSSSLSSIDLSQNTLSGSLNDMSFLASCSNLQSLNLSSNLLEFNSSHWKLTLRVADLSNNKISGPGIVLWLLNPDIEHLALKGNKITGDVDFSGSTSLQHLDLSSNNFSVSIPSLGDCSSLKYLDLSANKYFGDIATTLSPCKALLYLNLSSNQFTGLVPSLPLGSLQFVYLAANHFHGLIPPALADLCSTLVQLDLSSNNLTGDLPGPFGACSSLQSLDISSNLFTGALPMEVLTQMGSLRELAVAFNFFGGPLPVSLSKLSSLELLDLSSNNFSGPIPGSLCGDAGNNLKELYLQNNRFTGFIPPMLSNCSNLVALDLSFNFLTGTIPSSLGSLSKLRDLIIWLNQLHGEIPQELMYMKSLENLILDFNELSGNIPSGLVNCTKLNWISLSNNRLSGEIPAWIGKLSNLAILKLSNNSFSGRIPPELGDCTSLIWLDLNTNSLTGPIPPELSKQSGNIAVNFINGKTYVYIKNDGSKECHGAGNLLEFAGISQQQLNRISTKNPCNFTRVYGGKLQPTFNHNGSMIFLDISHNMLSGSIPKEFGVMYYLTILNLGHNNVSGSIPQELGKMKNLNILDLSNNRLEGQIPQSLTGLSLLTEIDLSNNMLSGTIPETGQFDTFPAARFQNNSDLCGVPLSPCGSDPTNSPSAQHMKSHRRQTSLVGSVAMGLLFSLFCIFGLIIIAIETRKRRKKKEAALEAYMDGNSHSGPANVSWKHTSTREALSINLATFEKPLRKLTFADLLDATNGFHNDSLIGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDQKKAGIKLNWSIRRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDIFDQELMKEDPNLEMELLQHLKIACSCLDDRPWRRPTMIQVMAMFKQIQVGSGIDSQSTIATDEEGFNAVEMVEMSIKEAPELSKH 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1137g00001 1184 SUPERFAMILY RNI-like 63 347 - -
Vium1137g00001 1184 ProSiteProfiles Protein kinase domain profile. 871 1148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1137g00001 1184 SUPERFAMILY RNI-like 284 572 - -
Vium1137g00001 1184 SMART LRR_typ_2 410 432 IPR003591 -
Vium1137g00001 1184 SMART LRR_typ_2 216 238 IPR003591 -
Vium1137g00001 1184 SMART LRR_typ_2 716 739 IPR003591 -
Vium1137g00001 1184 SMART LRR_typ_2 692 715 IPR003591 -
Vium1137g00001 1184 SMART LRR_typ_2 528 552 IPR003591 -
Vium1137g00001 1184 SMART LRR_typ_2 480 504 IPR003591 -
Vium1137g00001 1184 SMART LRR_typ_2 262 285 IPR003591 -
Vium1137g00001 1184 SMART LRR_typ_2 382 406 IPR003591 -
Vium1137g00001 1184 FunFam Brassinosteroid LRR receptor kinase 947 1148 - -
Vium1137g00001 1184 PRINTS Leucine-rich repeat signature 312 325 - -
Vium1137g00001 1184 PRINTS Leucine-rich repeat signature 692 705 - -
Vium1137g00001 1184 ProSitePatterns Protein kinases ATP-binding region signature. 877 900 IPR017441 GO:0005524
Vium1137g00001 1184 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 408 595 - -
Vium1137g00001 1184 SMART serkin_6 871 1143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1137g00001 1184 ProSiteProfiles Leucine-rich repeat profile. 217 239 IPR001611 GO:0005515
Vium1137g00001 1184 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 94 286 - -
Vium1137g00001 1184 Gene3D Phosphorylase Kinase; domain 1 832 946 - -
Vium1137g00001 1184 SUPERFAMILY L domain-like 639 762 - -
Vium1137g00001 1184 FunFam serine/threonine-protein kinase BRI1-like 2 832 946 - -
Vium1137g00001 1184 Gene3D - 583 643 - -
Vium1137g00001 1184 SUPERFAMILY Protein kinase-like (PK-like) 857 1148 IPR011009 -
Vium1137g00001 1184 FunFam Serine/threonine-protein kinase BRI1-like 1 585 642 - -
Vium1137g00001 1184 Pfam Leucine rich repeat 410 467 IPR001611 GO:0005515
Vium1137g00001 1184 Pfam Leucine rich repeat 311 369 IPR001611 GO:0005515
Vium1137g00001 1184 Pfam Leucine rich repeat 671 729 IPR001611 GO:0005515
Vium1137g00001 1184 ProSitePatterns Serine/Threonine protein kinases active-site signature. 993 1005 IPR008271 GO:0004672|GO:0006468
Vium1137g00001 1184 CDD STKc_IRAK 877 1146 - -
Vium1137g00001 1184 Pfam Protein kinase domain 871 1141 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1137g00001 1184 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 171 407 - -
Vium1137g00001 1184 Pfam Leucine rich repeat N-terminal domain 34 67 IPR013210 -
Vium1137g00001 1184 Pfam Leucine Rich repeats (2 copies) 216 259 IPR025875 -
Vium1137g00001 1184 Pfam Brassinosteroid receptor island domain 578 642 IPR045381 -
Vium1137g00001 1184 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 639 761 - -
Vium1137g00001 1184 Gene3D Ribonuclease Inhibitor 36 761 IPR032675 -
Vium1137g00001 1184 Gene3D Transferase(Phosphotransferase) domain 1 947 1148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1137g00001 Vium-Chr1137 39866 43928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1137g00001 34 1180 Receptor kinase-like Gene Family AT4G39400 69.218 0.0 1524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vium1137g00001 Pkinase 5.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1137g00001 K13415 - gmx:100499629 1985.3