Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11379g00001 ATGGCTGTAAGATCGCACTCCCAAGAATTCACCTACGATGTGTTCCTCAACTTCAGAGGCTCAGACACACGCTATGGTTTTGCTGGCAATCTCTACAAAGCTCTGGATGACAGGGGAATCCACACTTTCATTGATGACAAGAAGATTCGGGGTGGAGATGAACTTGCACCAACACTTGTGAAGGCAATTCAAGGGTCCATGATTGCCATCACTGTGCTTTCTATCACCTATGCTTCTTCTTCATTTTGTTTAGATGAACTGGTTTACATCCTTGAACGTGCTGAGGAAAAAAAGTTGCTGGTTTTGCCAGTTTTTTATGACGTGGATCCTTCTTTTGTGAGGCACCAAAAAGGAAGTTTTGGCGAAGCATTGGCTTGGCATGAGGAAAGGCTCAAAGCTGATAATAAGGAGAGGTTAAACCATCACATGGAGAAGTTGGAGAAATGGAAGATGGCTCTTCATCAAGTAGCTAACTTGTCTGGCTTTCATTACAAATATGGAGAAGGATATGAATACAAGTTTATTGGGAAGATTGTTGAGTGGGTCTCTAGTGAGATTAATCGTACTCCTTTACATGTGGCGGATTACCCGGTTGGATTAGACTCACAAGAGTTAAAAGTAATGAAGCTTTTGGATGTAGGATCTAGTGATGGTGTCCTCATGATAGGGATCTATGGAATGGGAGGGATAGGGAAAACGTCACTTGCTTCAGCAGTTTATAATTTGATTGCTAGCCATTTTGATGGTTCCTGTTTTCTTCAAAATGTGAGAGAGAAATCACGCAAACACGGATTGGAACATCTTCAAAGCATCATTCTTTCCGAAATACTTGGAGATAAGAGAATTATGTTTGCAAGTGAGCAACAAGGAATTTCAATGATACAACACAGGCTCCAAAACAAGAGGCTTCTTTTGATTTTAGATGATGTTGACAAACATGAGCTGTTGCAGACACTTGTTGGAAGGCCTGACTGTTTTGGTCCTGGAAGCAAAGTCATCATCACCACTCGGGACAAACAACTGCTGGCATCTCATAATGTTCAAAAAACATATAAGGTGAAGAAATTAAATAAGAACCATGCTCTTCAATTGCTTACATGGAAAGTTTTCAAATCAGAACAAGTTTATCCAGAATACGAGGAGGTGCTTAATCGTGCAGTAACTTATGCTTGTGGCCTTCCATTGGCTTTGGAAGTAATAGGTGCCAACCTGTGTGGAAAAAGTATACAAGAATGCAAATCTGTCATAGATCAATATAAAAGAATTCCAAACAATCGAATCCAAGAGACTCTTAAAGTAAGCTTCGATGCTTTGCAGGAAGAAGAGAAGAGAGTTTTTCTTGACATTTCTTGTTGCTTCAAAGGATATAAATTAACCGAAGTTGAAGATATACTTCATGCTCATCATGGTGCTTGTATGAAATATCATATTGGCGTGTTGGCTGAAAAATCTCTCATAAAGATTGGTCAGTATGATTGTGTTACATTGCATGACTTGGTAGAGGACATGGGTAAGGAAATTGTCAGACAAGAGTCACCAGAAGAACCAGGGAAGCGCAGTAGGTTATGGTCACCAAAAGATATAATCCAAGTTTTGGAAGACAACACTGGAACAAGTGAAATTAAAATCATATGTCTGGATTTCCCCTTGTTTGAAAAGAAAATGGTAGAATGGAATGGGATGGCTTTCCAGAAGATGCAAAACCTCAAAACACTTATTATTAGAAGTGGAATATTTTCTGATGATCCCAAATGTTTTCCAAATAGTTTGAGAGTGTTGGAATGGTGGAGATATCCTTCACATTGTTTACCATCTTATTTTCAACCAAAACAGCTTGCAATATGCAAGTTACCCCATAGTCTCTTTATGTCATTTGAGATGGATGGATTAAGCAAGAAGCTCAGGAATCTACGGGTTTTGAATTTTGACTGCTGTGAAGGTTTAACTCAGATACCTGATGCCGTATCTGATCTCCAAAATTTGGAGGAACTTTCATTTCAAAATTGTGTAAATTTAGTTAGAGTTCATAATTCGGTTGGTTTGCTGGAGAAACTGAGGATATTGGAAGCTTCTGGTTGCATCAAGCTTAGGAATTTTCCACCCCTGAAGTTGACTTCTCTTGAAAAACTTGAACTTTCACATTGTTCTAGTCTTGAGAGGTTTCCAGAAATTATAGGAAAGATGGAAAACATAAGGGAACTTCGGTTGCTAGGAACTCTCATAAAAGGGTTGCCACTTTCATTTCAAAATCTAACTCGGCTTAAAAAGTTGTCCCTGCTATTCTGTGGAATTGTTCAGTTACAAAGCAGCATTGTCATGATGCCAGAACTGACACTTATTGAGGCTTGGGGATGGGAAGGGTGGCAGTGGATAAAGTGGGAAGAGGACGAAGAAAAAGATGGCTCAATGGTATCTTCAAAAGTAGAATTGCTTTGGGCGCCAAAATGCAACCTGCGTGATGATTTTTTTCAAATAGGTTTCACACGGTTTGCTCATGTGAAAGATTTAGACCTATCGAACAATAATTTCACACAGCTTCCTGAATGCATCAAAGAATGTCAATTTTTAAAAAAGCTTGACGTGAGTTGTTGCAAGCATCTTCGGGAAATCAGAGGAATCCCACCAAAGTTGAAACATTTCAACGCAACAAACTGTTTATCGCTGACACCCTCGAGTATAAGCATGTTCCTAAACGAGGATCTGTATGAGAATCGAAAAACCATGTTAGTTTTGCCAGGATCTAGGAAACCTGAATGGTTCAATTACTTTTGTTATGAACGTTCAAGTTCTTTCTGGATTCGCAACAAATTCCCCGGCAAAGTTCTTTGTCTTTTTGTTGCACCGAAGGATGGAGACATTAGTGATTATGTTAAACTCATGTTGGTCATCAATGACAAATTTTATGCATGTTTCTTTGATATCAAGTTCTTGAAGTTGGGAGCAGAACACACATTTCTTTTCGATCTACGAAATTTAATTTTCACCGACAATCTGTATAAAGTGCCTTTAGTGAATGAATGGAACCANCGTGCTGAGGAAAAAAAGTTGCTGGTTTTGCCAGTTTTTTATGACGTGGATCCTTCTTTTGTGAGGCACCAAAAAGGAAGTTTTGGCGAAGCATTGGCTTGGCATGAGGAAAGGCTCAAAGCTGATAATAAGGAGAGGTTAAACCATCACATGGAGAAGTTGGAGAAATGGAAGATGGCTCTTCATCAAGTAGCTAACTTGTCTGGCTTTCATTACAAATATGGAGAAGGATATGAATACAAGTTTATTGGGAAGATTGTTGAGTGGGTCTCTAGTGAGATTAATCGTACTCCTTTACATGTGGCGGATTACCCGGTTGGATTAGACTCACAAGAGTTAAAAGTAATGAAGCTTTTGGATGTAGGATCTAGTGATGGTGTCCTCATGATAGGGATCTATGGAATGGGAGGGATAGGGAAAACGTCACTTGCTTCAGCAGTTTATAATTTGATTGCTAGCCATTTTGATGGTTCCTGTTTTCTTCAAAATGTGAGAGAGAAATCACGCAAACACGGATTGGAACATCTTCAAAGCATCATTCTTTCCGAAATACTTGGAGATAAGAGAATTATGTTTGCAAGTGAGCAACAAGGAATTTCAATGATACAACACAGGCTCCAAAACAAGAGGCTTCTTTTGATTTTAGATGATGTTGACAAACATGAGCTGTTGCAGACACTTGTTGGAAGGCCTGACTGTTTTGGTCCTGGAAGCAAAGTCATCATCACCACTCGGGACAAACAACTGCTGGCATCTCATAATGTTCAAAAAACATATAAGGTGAAGAAATTAAATAAGAACCATGCTCTTCAATTGCTTACATGGAAAGTTTTCAAATCAGAACAAGTTTATCCAGAATACGAGGAGGTGCTTAATCGTGCAGTAACTTATGCTTGTGGCCTTCCATTGGCTTTGGAAGTAATAGGTGCCAACCTGTGTGGAAAAAGTATACAAGAATGCAAATCTGTCATAGATCAATATAAAAGAATTCCAAACAATCGAATCCAAGAGACTCTTAAAGTAAGCTTCGATGCTTTGCAGGAAGAAGAGAAGAGAGTTTTTCTTGACATTTCTTGTTGCTTCAAAGGATATAAATTAACCGAAGTTGAAGATATACTTCATGCTCATCATGGTGCTTGTATGAAATATCATATTGGCGTGTTGGCTGAAAAATCTCTCATAAAGATTGGTCAGTATGATTGTGTTACATTGCATGACTTGGTAGAGGACATGGGTAAGGAAATTGTCAGACAAGAGTCACCAGAAGAACCAGGGAAGCGCAGTAGGTTATGGTCACCAAAAGATATAATCCAAGTTTTGGAAGACAACACTGGAACAAGTGAAATTAAAATCATATGTCTGGATTTCCCCTTGTTTGAAAAGAAAATGGTAGAATGGAATGGGATGGCTTTCCAGAAGATGCAAAACCTCAAAACACTTATTATTAGAATTGGAATATTTTCTGATGATCCCAAATGTTTTCCAAATAGTTTGAGAGTGTTGGAATGGTGGAGATATCCTTCACATTGTTTACCATCTTATTTTCAACCAAAACAGCTTGCAATATGCAAGTTACCCCATAGTCTCTTTATGTCATTTGAGATGGATGGATTAAGCAAGAAGCTCAGGAATCTACGGGTTTTGAATTTTGACTGCTGTGAAGGTTTAACTCAGATACCTGATGCCGTATCTGATCTCCAAAATTTGGAGGAACTTTCATTTCAAAATTGTGTAAATTTAGTTAGAGTTCATAATTCGGTTGGTTTGCTGGAGAAACTGAGGATATTGGAAGCTTCTGGTTGCATCAAGCTTAGGAATTTTCCACCCCTGAAGTTGACTTCTCTTGAAAAACTTGAACTTTCACATTGTTCTAGTCTTGAGAGGTTTCCAGAAATTATAGGAAAGATGGAAAACATAAGGGAACTTCGGTTGCTAGGAACTCTCATAAAAGGGTTGCCACTTTCATTTCAAAATCTAACTCGGCTTAAAAAGTTGTCCCTGCTATTCTGTGGAATTGTTCAGTTACAAAGCAGCATTGTCATGATGCCAGAACTGACACTTATTGAGGCTTGGGGATGGGAAGGGTGGCAGTGGATAAAGTGGGAAGAGGACGAAGAAAAAGATGGCTCAATGGTATCTTCAAAAGTAGAATTGCTTTGGGCGCCAAAATGCAACCTGCGTGATGATTTTTTTCAAATAGGTTTCACACGGTTTGCTCATGTGAAAGATTTAGACCTATCGAACAATAATTTCACACAGCTTCCTGAATGCATCAAAGAATGTCAATTTTTAAAAAAGCTTGACGTGAGTTGTTGCAAGCATCTTCGGGAAATCAGAGGAATCCCACCAAAGTTGAAACATTTCAACGCAACAAACTGTTTATCGCTGACACCCTCGAGTATAAGCATGTTCCTAAACTAGGATCTGTATGAGAATCGAAAAACCATGTTAGTTTTGCCAGGATCTAGGAACCCTAAATGGTTCAATTGCTTAAGTAATGAACCTTCAAGTTCTTTCTGGATTCGCAACAAATTCCCTGGCAAAGTTCTTTGTCTTTTTGTTGCACCGAAGGATGGAGACATTAGTGATTATGTTAAAGTCATGTTGGTCATCAATGACAAAGTTTTTGTATGTTTCTTTGATAGGCTCAAGTTCTTGAAGTTGGGAGTAGGACACACATTTCTTTTCGATCTACGAAATTTAATTTTCACCAACAATCTGTATGAAGTGCCTTTAGAGAATGAATGGAACCATGTGAAGGTTATATATTTTGATCGAAAGCAGCCTCAATCTATAAAAAGCGGAATCCATGTATTCAAGCAGGAAAGTAGCGATGAAGATATTATGTTCACTGATCCTTATGCAAAGATACGTGAGAAGGAGAAGGAAGAAAGGCATAATGTAAGGATGCAGAGCTGGCAGGGGTATAAAATTGTTGGGAATCCAAGTGTGAGTCTAAGTCCCACATTGGAGAGAAATGAGAAAGTAGAGTGGTTTAGAAGAAGGAAGACCCATTAA 6045 0.3869 MAVRSHSQEFTYDVFLNFRGSDTRYGFAGNLYKALDDRGIHTFIDDKKIRGGDELAPTLVKAIQGSMIAITVLSITYASSSFCLDELVYILERAEEKKLLVLPVFYDVDPSFVRHQKGSFGEALAWHEERLKADNKERLNHHMEKLEKWKMALHQVANLSGFHYKYGEGYEYKFIGKIVEWVSSEINRTPLHVADYPVGLDSQELKVMKLLDVGSSDGVLMIGIYGMGGIGKTSLASAVYNLIASHFDGSCFLQNVREKSRKHGLEHLQSIILSEILGDKRIMFASEQQGISMIQHRLQNKRLLLILDDVDKHELLQTLVGRPDCFGPGSKVIITTRDKQLLASHNVQKTYKVKKLNKNHALQLLTWKVFKSEQVYPEYEEVLNRAVTYACGLPLALEVIGANLCGKSIQECKSVIDQYKRIPNNRIQETLKVSFDALQEEEKRVFLDISCCFKGYKLTEVEDILHAHHGACMKYHIGVLAEKSLIKIGQYDCVTLHDLVEDMGKEIVRQESPEEPGKRSRLWSPKDIIQVLEDNTGTSEIKIICLDFPLFEKKMVEWNGMAFQKMQNLKTLIIRSGIFSDDPKCFPNSLRVLEWWRYPSHCLPSYFQPKQLAICKLPHSLFMSFEMDGLSKKLRNLRVLNFDCCEGLTQIPDAVSDLQNLEELSFQNCVNLVRVHNSVGLLEKLRILEASGCIKLRNFPPLKLTSLEKLELSHCSSLERFPEIIGKMENIRELRLLGTLIKGLPLSFQNLTRLKKLSLLFCGIVQLQSSIVMMPELTLIEAWGWEGWQWIKWEEDEEKDGSMVSSKVELLWAPKCNLRDDFFQIGFTRFAHVKDLDLSNNNFTQLPECIKECQFLKKLDVSCCKHLREIRGIPPKLKHFNATNCLSLTPSSISMFLNEDLYENRKTMLVLPGSRKPEWFNYFCYERSSSFWIRNKFPGKVLCLFVAPKDGDISDYVKLMLVINDKFYACFFDIKFLKLGAEHTFLFDLRNLIFTDNLYKVPLVNEWNXRAEEKKLLVLPVFYDVDPSFVRHQKGSFGEALAWHEERLKADNKERLNHHMEKLEKWKMALHQVANLSGFHYKYGEGYEYKFIGKIVEWVSSEINRTPLHVADYPVGLDSQELKVMKLLDVGSSDGVLMIGIYGMGGIGKTSLASAVYNLIASHFDGSCFLQNVREKSRKHGLEHLQSIILSEILGDKRIMFASEQQGISMIQHRLQNKRLLLILDDVDKHELLQTLVGRPDCFGPGSKVIITTRDKQLLASHNVQKTYKVKKLNKNHALQLLTWKVFKSEQVYPEYEEVLNRAVTYACGLPLALEVIGANLCGKSIQECKSVIDQYKRIPNNRIQETLKVSFDALQEEEKRVFLDISCCFKGYKLTEVEDILHAHHGACMKYHIGVLAEKSLIKIGQYDCVTLHDLVEDMGKEIVRQESPEEPGKRSRLWSPKDIIQVLEDNTGTSEIKIICLDFPLFEKKMVEWNGMAFQKMQNLKTLIIRIGIFSDDPKCFPNSLRVLEWWRYPSHCLPSYFQPKQLAICKLPHSLFMSFEMDGLSKKLRNLRVLNFDCCEGLTQIPDAVSDLQNLEELSFQNCVNLVRVHNSVGLLEKLRILEASGCIKLRNFPPLKLTSLEKLELSHCSSLERFPEIIGKMENIRELRLLGTLIKGLPLSFQNLTRLKKLSLLFCGIVQLQSSIVMMPELTLIEAWGWEGWQWIKWEEDEEKDGSMVSSKVELLWAPKCNLRDDFFQIGFTRFAHVKDLDLSNNNFTQLPECIKECQFLKKLDVSCCKHLREIRGIPPKLKHFNATNCLSLTPSSISMFLNXDLYENRKTMLVLPGSRNPKWFNCLSNEPSSSFWIRNKFPGKVLCLFVAPKDGDISDYVKVMLVINDKVFVCFFDRLKFLKLGVGHTFLFDLRNLIFTNNLYEVPLENEWNHVKVIYFDRKQPQCXIKSGIHVFKQESSDEDIMFTDPYAKIREKEKEERHNVRMQSWQGYKIVGNPSVSLSPTLERNEKVEWFRRRKTH 2015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11379g00001 2015 Pfam TIR domain 12 179 IPR000157 GO:0007165
Vium11379g00001 2015 Pfam TIR domain 1011 1096 IPR000157 GO:0007165
Vium11379g00001 2015 SUPERFAMILY L domain-like 510 894 - -
Vium11379g00001 2015 Gene3D - 188 351 IPR027417 -
Vium11379g00001 2015 Gene3D - 1105 1268 IPR027417 -
Vium11379g00001 2015 SMART till_3 11 159 IPR000157 GO:0007165
Vium11379g00001 2015 PRINTS Disease resistance protein signature 390 404 - -
Vium11379g00001 2015 PRINTS Disease resistance protein signature 221 236 - -
Vium11379g00001 2015 PRINTS Disease resistance protein signature 702 718 - -
Vium11379g00001 2015 PRINTS Disease resistance protein signature 297 311 - -
Vium11379g00001 2015 Pfam NB-ARC domain 1123 1345 IPR002182 GO:0043531
Vium11379g00001 2015 Pfam NB-ARC domain 206 428 IPR002182 GO:0043531
Vium11379g00001 2015 SMART AAA_5 218 357 IPR003593 GO:0016887
Vium11379g00001 2015 SMART AAA_5 1135 1274 IPR003593 GO:0016887
Vium11379g00001 2015 SUPERFAMILY "Winged helix" DNA-binding domain 426 533 IPR036390 -
Vium11379g00001 2015 SUPERFAMILY Toll/Interleukin receptor TIR domain 1010 1079 IPR035897 -
Vium11379g00001 2015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1104 1366 IPR027417 -
Vium11379g00001 2015 Gene3D - 1003 1104 IPR035897 -
Vium11379g00001 2015 Gene3D - 10 187 IPR035897 -
Vium11379g00001 2015 Gene3D Ribonuclease Inhibitor 1464 1834 IPR032675 -
Vium11379g00001 2015 Gene3D Ribonuclease Inhibitor 547 909 IPR032675 -
Vium11379g00001 2015 Gene3D - 355 439 IPR042197 -
Vium11379g00001 2015 Gene3D - 1272 1356 IPR042197 -
Vium11379g00001 2015 SUPERFAMILY "Winged helix" DNA-binding domain 1343 1450 IPR036390 -
Vium11379g00001 2015 SUPERFAMILY L domain-like 1427 1811 - -
Vium11379g00001 2015 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 162 IPR035897 -
Vium11379g00001 2015 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 873 IPR044974 GO:0006952
Vium11379g00001 2015 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 188 - -
Vium11379g00001 2015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 449 IPR027417 -
Vium11379g00001 2015 ProSiteProfiles TIR domain profile. 10 186 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11379g00001 Vium-Chr11379 3618 11077 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11379g00001 12 759 WRKY Transcription Factor Family AT4G12020 30.631 9.89e-70 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11379g00001 - - vum:124820577 4049.97