Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11378g00001 ATGAGTCGCAAGCGAGACAGGCACTATTTTTCCCGCCACGACGCGGCCTCCAAGCGCCGCCGCCCCTTGCCAGAGCCCGTGGAGGAGGAGAGACCGACGACGAGGCCTGCGTTGCCTTCCGCGGTGGTCGTGATGGGTCTTCCTCAAGACTGCTCCGTCCTCGATCTCAAGTCTCGCTTCGAGATCTACGGCGCCATCTCCCGCATCCGCATCGACCGCGACGCCGTTGGCTACATTACTTACCGGTCAAAGGAATCTGCCGACGCCGCCATCGCCGCCGGTGTTGACCCCTCCTTTGGAATCACTGTTAGCTCCAAAAAGGTTCAGGTGTTGTGGGCAACAGACCCTCTAGCCATGTGGAGGGAAGGAGTTGGTAATAGCAAGGATAAAGGGCATATGTCAAAACTTGTTCGTGCTGAGGCACCTTTGAGCAAGCGTGGAAGAGGTAATAGACTTGCTTCAGCTATAGGGAACCCCAAACATGGTGAAAATAGCTCAGGTAGCCCAGTTTTAGAAGTGCCTTTCAAGGGCCGAGAAATTGTTGCCTATGATGATATCCTCTAACGTTTGGATAAGACATTTTAAGAGGATATGGTGATGGAAGAATCTGAAAAAAGAGAGAAAAAAGAAGAAAAAGGAGAACAAGTTGTGTGGAGTTGGGGTGCTGGAACGGAGGGTCAGTTAGGAACAAAGATTGTTAAGGATGAGCTCTTCCCTCAACTCCTTCACCAACCCTCTCTCTCTTCCATCTCTTCCCTTGCATGTGGCGGCGCTCATGTCATAGCCTTGACCTTTGCTGGGAAGGTACTTTCATGGGGTAGGGGCAATTCGGGGCAATTGGGCCATGGGGAGGTTGTGAGTAACGCTTTGTTTCCCAAGGCTGTAACGTCATTGGATGGCTACTTCATAACCAATGTCGCTGCTGGGTGGAGCCACTCGGGTTTTGTTTCAGATTCAGGGTGTGTCTTCACTTGTGGGGATGGGACGTTTGGTCAACTGGGACATGGAGATTATGCCTCACACTGTTCTCCTGTGAAATTGACATGTTTTGGTGATCAGCGTGTAGCGCAGGTTGCATGTGGAATGCGCCACTCCCTAGTGTTGTTGAAAGATTGTGTAGGAAATCAAGTTTATGGATTTGGCTTTGGGAAGCGTGGTCAGCTGGGTGTCAGCAACGATAAGGTCAAATCTGTTAGTGTTCCTAGAACTGTTACTGGCTTTGAAGGTGTTGAAATCATTGGAATTGCTGCAAATGGAGATCATAGTGCTGCAGTATCTGTTGATGGGCACGTTTATACTTGGGGAAGAGGCTTCAAGGGCTTTGAAGATGCTCACGTTCCTCATTGCTTAAACTCTTCTTTGAATTTTATCAAAGTTGCTCTGGGATGGAACCATGCTTTAGCAGTGACTGGTGAGGGAGAGGTTTATATGCTAGGTGGAAACCACCTTGGAGTGCTTAGTGATCTTCAGAACATAAGCCCCCCAGCCAAGTATATACCTGATTTAAGAGAAGTCAATTTGGAGAAAGTCCCTGGCCTTGATGGGATGAAGATTACTGATATTGCTACCGGAGCCGAGCATTCTGTCATTGTCACAGATAATGGAGAAATAAAGACATGGGGTTGGGGTGAGCACGGCCAACTTGGTTTAGGAGATACTTGCGATCAAATCAGTCCTGTTACAGTAAATCTAGGTTATGATCGGAATGAAGCTGAATCAATTAAAGTTTTCTGTGGAAGTGGGTTCACATTTGCTGTAACTATGCCCTAA 1770 0.4847 MSRKRDRHYFSRHDAASKRRRPLPEPVEEERPTTRPALPSAVVVMGLPQDCSVLDLKSRFEIYGAISRIRIDRDAVGYITYRSKESADAAIAAGVDPSFGITVSSKKVQVLWATDPLAMWREGVGNSKDKGHMSKLVRAEAPLSKRGRGNRLASAIGNPKHGENSSGSPVLEVPFKGREIVAYDDILXRLDKTFXEDMVMEESEKREKKEEKGEQVVWSWGAGTEGQLGTKIVKDELFPQLLHQPSLSSISSLACGGAHVIALTFAGKVLSWGRGNSGQLGHGEVVSNALFPKAVTSLDGYFITNVAAGWSHSGFVSDSGCVFTCGDGTFGQLGHGDYASHCSPVKLTCFGDQRVAQVACGMRHSLVLLKDCVGNQVYGFGFGKRGQLGVSNDKVKSVSVPRTVTGFEGVEIIGIAANGDHSAAVSVDGHVYTWGRGFKGFEDAHVPHCLNSSLNFIKVALGWNHALAVTGEGEVYMLGGNHLGVLSDLQNISPPAKYIPDLREVNLEKVPGLDGMKITDIATGAEHSVIVTDNGEIKTWGWGEHGQLGLGDTCDQISPVTVNLGYDRNEAESIKVFCGSGFTFAVTMP 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11378g00001 589 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 473 534 IPR000408 -
Vium11378g00001 589 MobiDBLite consensus disorder prediction 7 32 - -
Vium11378g00001 589 SUPERFAMILY RCC1/BLIP-II 406 587 IPR009091 -
Vium11378g00001 589 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 215 266 IPR000408 -
Vium11378g00001 589 SUPERFAMILY RCC1/BLIP-II 216 392 IPR009091 -
Vium11378g00001 589 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 133 587 - -
Vium11378g00001 589 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 267 319 IPR000408 -
Vium11378g00001 589 MobiDBLite consensus disorder prediction 1 34 - -
Vium11378g00001 589 Gene3D - 442 588 IPR009091 -
Vium11378g00001 589 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 535 589 IPR000408 -
Vium11378g00001 589 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 92 IPR000504 GO:0003723
Vium11378g00001 589 Pfam Regulator of chromosome condensation (RCC1) repeat 376 425 IPR000408 -
Vium11378g00001 589 Pfam Regulator of chromosome condensation (RCC1) repeat 267 315 IPR000408 -
Vium11378g00001 589 Pfam Regulator of chromosome condensation (RCC1) repeat 535 586 IPR000408 -
Vium11378g00001 589 Pfam Regulator of chromosome condensation (RCC1) repeat 319 368 IPR000408 -
Vium11378g00001 589 Pfam Regulator of chromosome condensation (RCC1) repeat 217 263 IPR000408 -
Vium11378g00001 589 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 429 472 IPR000408 -
Vium11378g00001 589 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 320 371 IPR000408 -
Vium11378g00001 589 CDD RRM_SF 42 93 - -
Vium11378g00001 589 Gene3D - 195 441 IPR009091 -
Vium11378g00001 589 PRINTS Chromosome condensation regulator RCC1 signature 462 480 IPR000408 -
Vium11378g00001 589 PRINTS Chromosome condensation regulator RCC1 signature 269 285 IPR000408 -
Vium11378g00001 589 PRINTS Chromosome condensation regulator RCC1 signature 530 551 IPR000408 -
Vium11378g00001 589 PRINTS Chromosome condensation regulator RCC1 signature 216 232 IPR000408 -
Vium11378g00001 589 PRINTS Chromosome condensation regulator RCC1 signature 250 263 IPR000408 -
Vium11378g00001 589 SMART rrm1_1 41 111 IPR000504 GO:0003723
Vium11378g00001 589 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 375 428 IPR000408 -
Vium11378g00001 589 SUPERFAMILY RNA-binding domain, RBD 28 118 IPR035979 GO:0003676
Vium11378g00001 589 MobiDBLite consensus disorder prediction 149 169 - -
Vium11378g00001 589 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 358 368 IPR000408 -
Vium11378g00001 589 Gene3D - 1 117 IPR012677 -
Vium11378g00001 589 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 115 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11378g00001 Vium-Chr11378 16154 22496 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11378g00001 1 187 Homeobox Transcription Factor Family AT1G27050 51.942 1.74e-56 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11378g00001 - - gmx:100793672 964.911