Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1135g00001 ATGTCTTTAAGCTTGAGGAATCTCTCATCTTCTTACAAAATCTTCTCCCTCTCTTTGCTTCTTTTATTTCATTGTTGTTACTCCCAGCTTAATGAGCAAGGCCAAGCTCTTTTAGCATGGAAAAACAGTTTAAACAGTTCTGCAGATGCATTAGTATCTTGGAATCCTTCCAGCACAAGCCCATGCAATTGGTTTGGGGTGCGCTGCAACTTAGAAGGAGAGGTGGTTGAGATAAACCTGAGTTCAGTGAACTTGCAAGGCTCGTTACCTTCAAATTTTCAACTTTTCAGGAATTTGAAGATTCTTGCCCTCTCAGCAGCCAACATCACAGGCAGGATTCCAAAGGAGATTGGAGACTGTAAAGAGCTCACTTTCATTGATCTCAGTGGCAATTCTCTCTTTGGTGAAATCCCAGAAGAAATTTGCAGGCTGAGCAAACTGCAGACTTTAGCTCTGCATACCAACTTTCTTGAAGGCAACATTCCATCCAGCATAGGAAATTTATCGAGTCTGGTGAACTTGACACTCTATGACAACAAACTGAGTGGTGAAATTCCAAAGATTATTAGCTCATTAACTGAGCTCCAAGTGTTGAGAGTAGGAGGGAACACAAACCTTAAGGGTGAGGTGCCATGGGATATTGGAAACTGCACCAACTTGGTGGTGTTAGGCCTTGCAGAAACCAGCATTTCTGGGAATCTTCCTTCTTCAATAGGGATGCTGAAAAGAGTTCAGACCATAGCCATTTACACAACTCTGCTATCAGGCTCTATACCAGAAGAGATAGGGAAGTGCAGTGAGTTACAGAACCTGTACTTGTATCAGAACTCAATCTCTGGTTCAATCCCAAGTCAAATTGGAGAGCTCAGCAAGCTTAAGAATCTTCTCTTGTGGCAAAACAATATAGTTGGTACAATCCCAGAAGAGCTTGGAAGCTGCACTCAACTGGAAGTCATAGACATGTCAGAAAATCTTCTCACAGGGAGCATACCAACCAGTTTTGGTAAGCTATCAAATCTGCAAGGGCTTCAACTGAGTGTTAACAAGATTTCAGGCATTATACCTCCTGAAATCACAAATTGCACTTCCCTGACTCAACTGGAAGTTGACAATAATGCTATCTCTGGAGAGATTCCTCCTGTTATCGGAAACTTGAGAAGCTTGACTCTCTTCTTTGCATGGCAGAACAAGCTGACAGGAAAAATCCCAGATAGTCTTTCACAGTGCCAAGATCTTCAGGCTCTTGATCTCTCTTACAACAATTTAACTGGTCCAATACCCAAACAACTTTTTGGACTGAGGAACCTCACTAAACTACTGCTTCTTTCCAACGATTTGTCTGGCTTTATACCACCTGAGATAGGTAATTGCACAAGCCTCTACAGGTTGAGGTTAAATCACAATAGACTGTCAGGTACAGTTCCATCTGAGATCACCAACTTGAAGAATTTGAACTTTTTGGACGTGAGCAGCAATCATCTTGTAGGGGAAATTCCTCCTACACTATCCAGATGCCAAAACCTTGAGTTTCTGGACCTTCACTCAAATAGTCTTATTGGCTCAGTTCCAAACAATCTGCCCAAAAACCTGCAGCTAATCGACCTCTCAGACAACAGACTAACAGGTGAACTGAGCCATTCCATTGGTTCATTAACCGAGTTAGCCAAACTCAACTTGGGAAAGAATCAACTCAGCGGAAGTATCCCTGCTAAGATCCTATCTTGCTCCAAGTTACAACTTCTGGACTTGGGAAGCAATAGTTTCTCTGGAGAAATTCCCAAGGAAATTGCTCAAATTCCTTCACTAGAAATCTTTCTCAATCTTAGCTGTAACCAGTTTTCTGGTGAAATTCCACCCCAGTTCTCCGGTCTTAGAAAACTTGGAGTGCTTGACCTCTCTCACAACAAGCTCTCAGGGAAGTTGGATACTCTCTCTGACCTTCAAAACCTTGTTTCTTTAAATGTTTCCTTCAATGACTTCACCGGAGAATTGCCTAACACCCCATTCTTCAGGAAGCTCCCTCTCAGTGATCTCACAGGAAATGATGGCCTCTACATTGTTGGTTCTGTAGACAGAAAGGAAGCCAAGGTTCATGCCAGGTTGTTTATGAAAATTATATTATCCATTCTCTTAAGCACCAGTGCAGTACTAATACTGCTCACAATCCATGTCTTGATTCGTGCTCATGTTTCTAACAAAGCATTCACGGGAAACAACAATTGGGTGTTAACTCTGTATCAGAAGTTTGAATTCTCAGTTGATGATATTGTCCGTAATTTGACTTCATCCAATGTGATTGGCACTGGAAGCTCTGGAGTTGTGTACAAGGTTACAGTACCAAATGGCCAAACACTAGCAGTTAAAAAGATGTGGACATCAGCAGAGTCAGGAGCATTTACTTCTGAAATTCAAACACTGAGTTCAATTAGACATAAAAACATCATCAAGCTTCTGGGTTGGGGGTCCAGCAAGAACATGAAGCTGCTGTTTTATGAGTACCTCCCTAACGGAAGCTTGAGCTCATTACTTCATGGTTCAGGAAAGGGAAAAGCAGAATGGGAAATCAGATACGATGTTATGGTAGGAGTGGCCAATGCACTTGCATATTTGCACCATGATTGTGAGCCTTCCATATTGCATGGAGATGTCAAAGCCATGAACGTGTTGTTAGGTCCTGGCTATCAGCCTTACCTATCTGACTTCGGCCTAGCTAGAATTGCAAGTGAAAATGGTGATTGTACAAATTCCAAGCCATTTCAAAGACCCTACCTTGCTGGCTCCTATGGGTACATGGCTCCAGAGCATGCATCTATGCAGCAGATCACTGAGAAGAGTGATGTGTACAGTTTTGGGGTGGTCCTACTTGAGGTCCTGACAGGAAGGCACCCTCTTGACCCAACACTTCCTGGGGGTGGTGCACACTTGGTTCAGTGGGTTAGGAACCACTTAGCCAGCAAAGGAGACCCATCTGACATTCTTGACCCAACACTCAGAGGGAGAACTGATTCCACTGTGCATGAAATGTTACAAACTCTAGCTGTCTCATTTCTATGTGTCAGCACCAGAGCTGAGGACCGTCCAACAATGAAGGACACTGTTGCAATGCTTAGGGAAATCCGATTTGTTGAGGCACCAACCGCAGCTTATGATGCATCGAATGGAGTTTCAACAGTGCATGCTTCTCCATCACCTCTTAAAACTGTAGTTTCACATGGAACTTCTAAATGTTCCTTTGATTTTTCTGAGGACTCAATCTGTTGA 3261 0.4293 MSLSLRNLSSSYKIFSLSLLLLFHCCYSQLNEQGQALLAWKNSLNSSADALVSWNPSSTSPCNWFGVRCNLEGEVVEINLSSVNLQGSLPSNFQLFRNLKILALSAANITGRIPKEIGDCKELTFIDLSGNSLFGEIPEEICRLSKLQTLALHTNFLEGNIPSSIGNLSSLVNLTLYDNKLSGEIPKIISSLTELQVLRVGGNTNLKGEVPWDIGNCTNLVVLGLAETSISGNLPSSIGMLKRVQTIAIYTTLLSGSIPEEIGKCSELQNLYLYQNSISGSIPSQIGELSKLKNLLLWQNNIVGTIPEELGSCTQLEVIDMSENLLTGSIPTSFGKLSNLQGLQLSVNKISGIIPPEITNCTSLTQLEVDNNAISGEIPPVIGNLRSLTLFFAWQNKLTGKIPDSLSQCQDLQALDLSYNNLTGPIPKQLFGLRNLTKLLLLSNDLSGFIPPEIGNCTSLYRLRLNHNRLSGTVPSEITNLKNLNFLDVSSNHLVGEIPPTLSRCQNLEFLDLHSNSLIGSVPNNLPKNLQLIDLSDNRLTGELSHSIGSLTELAKLNLGKNQLSGSIPAKILSCSKLQLLDLGSNSFSGEIPKEIAQIPSLEIFLNLSCNQFSGEIPPQFSGLRKLGVLDLSHNKLSGKLDTLSDLQNLVSLNVSFNDFTGELPNTPFFRKLPLSDLTGNDGLYIVGSVDRKEAKVHARLFMKIILSILLSTSAVLILLTIHVLIRAHVSNKAFTGNNNWVLTLYQKFEFSVDDIVRNLTSSNVIGTGSSGVVYKVTVPNGQTLAVKKMWTSAESGAFTSEIQTLSSIRHKNIIKLLGWGSSKNMKLLFYEYLPNGSLSSLLHGSGKGKAEWEIRYDVMVGVANALAYLHHDCEPSILHGDVKAMNVLLGPGYQPYLSDFGLARIASENGDCTNSKPFQRPYLAGSYGYMAPEHASMQQITEKSDVYSFGVVLLEVLTGRHPLDPTLPGGGAHLVQWVRNHLASKGDPSDILDPTLRGRTDSTVHEMLQTLAVSFLCVSTRAEDRPTMKDTVAMLREIRFVEAPTAAYDASNGVSTVHASPSPLKTVVSHGTSKCSFDFSEDSIC 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1135g00001 1086 SUPERFAMILY L domain-like 31 306 - -
Vium1135g00001 1086 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 729 833 - -
Vium1135g00001 1086 SUPERFAMILY RNI-like 282 653 - -
Vium1135g00001 1086 PRINTS Leucine-rich repeat signature 412 425 - -
Vium1135g00001 1086 PRINTS Leucine-rich repeat signature 624 637 - -
Vium1135g00001 1086 Gene3D Phosphorylase Kinase; domain 1 729 833 - -
Vium1135g00001 1086 ProSiteProfiles Leucine-rich repeat profile. 626 648 IPR001611 GO:0005515
Vium1135g00001 1086 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 189 280 - -
Vium1135g00001 1086 Pfam Leucine Rich Repeat 529 551 IPR001611 GO:0005515
Vium1135g00001 1086 FunFam Leucine-rich receptor-like protein kinase family protein 30 188 - -
Vium1135g00001 1086 Pfam Leucine rich repeat 606 660 IPR001611 GO:0005515
Vium1135g00001 1086 Pfam Leucine rich repeat 315 374 IPR001611 GO:0005515
Vium1135g00001 1086 ProSitePatterns Protein kinases ATP-binding region signature. 766 789 IPR017441 GO:0005524
Vium1135g00001 1086 Gene3D Transferase(Phosphotransferase) domain 1 834 1053 - -
Vium1135g00001 1086 Gene3D Ribonuclease Inhibitor 189 328 IPR032675 -
Vium1135g00001 1086 SMART LRR_sd22_2 313 342 - -
Vium1135g00001 1086 SMART LRR_sd22_2 265 291 - -
Vium1135g00001 1086 SMART LRR_sd22_2 481 510 - -
Vium1135g00001 1086 SMART LRR_sd22_2 168 194 - -
Vium1135g00001 1086 SMART LRR_sd22_2 624 649 - -
Vium1135g00001 1086 SMART LRR_sd22_2 527 553 - -
Vium1135g00001 1086 SUPERFAMILY Protein kinase-like (PK-like) 751 1036 IPR011009 -
Vium1135g00001 1086 Gene3D Ribonuclease Inhibitor 605 689 IPR032675 -
Vium1135g00001 1086 Gene3D Ribonuclease Inhibitor 329 426 IPR032675 -
Vium1135g00001 1086 Gene3D Ribonuclease Inhibitor 427 526 IPR032675 -
Vium1135g00001 1086 ProSiteProfiles Protein kinase domain profile. 760 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1135g00001 1086 Pfam Protein kinase domain 763 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1135g00001 1086 SMART serkin_6 760 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1135g00001 1086 ProSitePatterns Serine/Threonine protein kinases active-site signature. 878 890 IPR008271 GO:0004672|GO:0006468
Vium1135g00001 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 834 1053 - -
Vium1135g00001 1086 FunFam Leucine-rich receptor-like protein kinase family protein 332 604 - -
Vium1135g00001 1086 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vium1135g00001 1086 FunFam Putative LRR receptor-like serine/threonine-protein kinase 605 690 - -
Vium1135g00001 1086 SMART LRR_typ_2 433 457 IPR003591 -
Vium1135g00001 1086 SMART LRR_typ_2 144 168 IPR003591 -
Vium1135g00001 1086 SMART LRR_typ_2 551 575 IPR003591 -
Vium1135g00001 1086 SMART LRR_typ_2 624 647 IPR003591 -
Vium1135g00001 1086 SMART LRR_typ_2 289 313 IPR003591 -
Vium1135g00001 1086 SMART LRR_typ_2 337 361 IPR003591 -
Vium1135g00001 1086 SMART LRR_typ_2 481 505 IPR003591 -
Vium1135g00001 1086 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 396 1031 - -
Vium1135g00001 1086 Gene3D Ribonuclease Inhibitor 30 188 IPR032675 -
Vium1135g00001 1086 Gene3D Ribonuclease Inhibitor 527 604 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1135g00001 Vium-Chr1135 15337 19090 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1135g00001 26 1085 Receptor kinase-like Gene Family AT5G56040 64.266 0.0 1367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium1135g00001 Pkinase 9.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1135g00001 - - gmx:100813139 1859.34