LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium11356g00003	ATGGGTAAAAACTTTAGGCTTTTGGATGATCTTCATGTTCACATTCTTGCTTCTCGTGAATCCAGTTCAGGAAGGGATACCATTCGCATGGAATACCTTACTCTTATTCTTAAACGACTGACTGAACCCCTACGAACCCTTCCTAAGGCTGAAGCGGTTCAACAAGTTGTGGAATTCATGAATACATACTCTATCAGTCAGGAAGATTTTGATACTATAGTAGAGTTATCAAAATTCAAGGGTCAATCTAATCCACTAGATGGGATCCAGCCTGCTGTTAAGTCAGCTTTGACAAAAGCCTATAAAGAGCAAAGCAGATCTCGGGTGGTTCGAGTTGCCGACCAAATCACACTTCCCGGTGTAAAGAAGGCCCCTAAGAAGCGGATTGCTGCTATACTTGAACCAGCCGAGGAAGGAGGCAAAAATGAAGATGACACCTTGGACGAGAGTGAAGAAGAGAACACCTCTGATACAGAAGAGTTGGGCATCACCAAGGGAGAGAAGCTGCAATCAGAACTTCAAAGCTTGAATTCAAAAGCCACGCAAGTGCAGTTGGAACTGAAGGGAACGGGTAATTCGAGTTCCAAGAAGGCATCGGCTGGTAGAGGTAAAGGTGCTTCCGCATCTGGGAAAAAGGTTGCTCAAGCTCCAAAAAGAAAAAGGTGA	666	0.4444	MGKNFRLLDDLHVHILASRESSSGRDTIRMEYLTLILKRLTEPLRTLPKAEAVQQVVEFMNTYSISQEDFDTIVELSKFKGQSNPLDGIQPAVKSALTKAYKEQSRSRVVRVADQITLPGVKKAPKKRIAAILEPAEEGGKNEDDTLDESEEENTSDTEELGITKGEKLQSELQSLNSKATQVQLELKGTGNSSSKKASAGRGKGASASGKKVAQAPKRKR	221

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium11356g00003	221	PANTHER	CHROMOSOME TRANSMISSION FIDELITY FACTOR 18	2	197	-	-
	Vium11356g00003	221	MobiDBLite	consensus disorder prediction	132	221	-	-
	Vium11356g00003	221	Pfam	Replication factor RFC1 C terminal domain	2	102	IPR013725	GO:0003689\|GO:0005524\|GO:0005663\|GO:0006260
	Vium11356g00003	221	Coils	Coil	166	186	-	-
	Vium11356g00003	221	MobiDBLite	consensus disorder prediction	168	200	-	-
	Vium11356g00003	221	MobiDBLite	consensus disorder prediction	141	157	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium11356g00003	Vium-Chr11356	10298	12114	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium11356g00003	2	183	Core DNA Replication Machinery Family	AT5G22010	61.081	6.06e-72	233

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium11356g00003	K10754		-	vum:124820555	358.992