Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11356g00001 ATGGATGAGAGGATAAACCTTAGCATGAGTGATCCTGATCTTGTTCCTCTTCTTATTCAGGAAAATTATATTAATTATAAACCAAGCTTGGCCGGTAAGGATGACAATGGGATAAAACGCATGAACCTGATTGCCCGTGCTGCTGAGTCTATTGCTGATGGGGATATAGTGAATGTTCAGATTCGCAGATATAGACAGTGGCAGCTCTCTCAAGCTAGTTGTACAGCAACATGCATAATTCCTGCATCATTGTTGCATGGCCAAAGAGAAATACTTGAACAGGGAGAACGCAATTTCAACCGGTTTGGTGGGTGGCTGGGGAAGAACTCGACAATGGGTAAAAACTTTAGGCTTTTGGATGATCTTCATGTTCACATTCTTGCTTCTCGTGAATCCAGTTCAGGAAGGGATACCATTCGCATGGAATACCTTACTCTTATTCTTAAACGACTGACTGAACCCCTACGAACCCTTCCTAAGGCTGAAGCGGTTCAACAAGTTGTGGAATTCATGAATACATACTCTATCAGTCAGGAAGATTTTGATACTATAGTAGAGTTATCAAAATTCAAGGGTCAATCTAATCCACTAGATGGGATCCAGCCTGCTGTTAAGTCAGCTTTGACAAAAGCCTATAAAGAGCAAAGCAGATCTCGGGTGGTTCGAGTTGCCGACCAAATCACACTTCCCGGTGTAAAGAAGGCCCCTAAGAAGCGGATTGCTGCTATACTTGAACCAGCCGAGGAAGGAGGCAAAAATGAAGATGACACCTTGGACGAGAGTGAAGAAGAGAACACCTCTGATACAGAAGAGTTGGAAGGCATCACCAAGGGAGAGAAGCTGCAATCAGAACTTCAAAGCTTGAATTCAAAAGCCACGCAAGTACAGTTGGAACTGAAGGGAACGGGTAATTCGAGTTCCAAGAAGGCATCGGCTGGTAGAGGTAAAGGTGCTTCCGCATCTGGGAAAAAGGTTGCTCAAGCTCCAAAAAGAAAAAGGTGA 1002 0.4391 MDERINLSMSDPDLVPLLIQENYINYKPSLAGKDDNGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQASCTATCIIPASLLHGQREILEQGERNFNRFGGWLGKNSTMGKNFRLLDDLHVHILASRESSSGRDTIRMEYLTLILKRLTEPLRTLPKAEAVQQVVEFMNTYSISQEDFDTIVELSKFKGQSNPLDGIQPAVKSALTKAYKEQSRSRVVRVADQITLPGVKKAPKKRIAAILEPAEEGGKNEDDTLDESEEENTSDTEELEGITKGEKLQSELQSLNSKATQVQLELKGTGNSSSKKASAGRGKGASASGKKVAQAPKRKR 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11356g00001 333 MobiDBLite consensus disorder prediction 280 312 - -
Vium11356g00001 333 Coils Coil 278 298 - -
Vium11356g00001 333 MobiDBLite consensus disorder prediction 243 333 - -
Vium11356g00001 333 SUPERFAMILY post-AAA+ oligomerization domain-like 2 127 IPR008921 GO:0003677|GO:0006260
Vium11356g00001 333 Pfam Replication factor RFC1 C terminal domain 51 213 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Vium11356g00001 333 MobiDBLite consensus disorder prediction 252 269 - -
Vium11356g00001 333 Gene3D - 1 92 - -
Vium11356g00001 333 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 3 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11356g00001 Vium-Chr11356 7 7328 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11356g00001 1 295 Core DNA Replication Machinery Family AT5G22010 69.024 2.83e-144 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11356g00001 K10754 - vum:124820559 585.489