Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11353g00001 ATGGCGATGGCTTTCTCTAACTGTTTGGTTCCTTTGGTCCTTTTAATGGCTCTCTCTGTACCAGCTTTCTCATATGCCAGTGCATGGCATAGTGCCCATGCAACTTTCTACGGTGACATGCAAGGTGGAGAAACCATGCAGGGAGCTTGTGGTTATGGCGATCTGTTCCAGCAAGGTTACGGGCTTGAAACCGCCGCCTTAAGCACAGCACTGTTCAACAATGGCCTGAGCTGTGGTGCATGTTTTGAGATAAAGTGCGTGGACGACCCTAAATGGTGCATTCCGAATGCAGGTTCGATCAAAGTTACTGCAACAAATTTCTGTCCGCCGAATTACTCGCCACCGAATTTAGACCACTGGTGCAATCCTCCACAGGAACACTTCGACTTGTCGATGAAAATGTTCACCAGCATTGCCGCGTACAGAGCTGGGATAATCCCAGTGAAGTATCGTAGAGTGGCATGCAGAAAAAGTGGGGGTGTGAAATTCCAAACAGCAGGGAACCCTTATTGGCTTCTGGTTTTGGTGTACAACGTTGGCAATGCCGGTGATGTTTCCGAGGTTAGCATCAAAGGATCGAATGGTGAGTGGAAATCCATGTCTAGGGTTTGGGGACAGAATTGGTTGACCGGAGAGAACTTGGTGGGGCGATCTTTGTCCTTTAAGGTGACTACCAGTGATGGAAAAGTGGTGGAGTTCGACGAGGTCGCACCTTCCGGTTGGCAATTTGGACAGAGCTACGAGGCCCACACTAATTTTTAG 762 0.4895 MAMAFSNCLVPLVLLMALSVPAFSYASAWHSAHATFYGDMQGGETMQGACGYGDLFQQGYGLETAALSTALFNNGLSCGACFEIKCVDDPKWCIPNAGSIKVTATNFCPPNYSPPNLDHWCNPPQEHFDLSMKMFTSIAAYRAGIIPVKYRRVACRKSGGVKFQTAGNPYWLLVLVYNVGNAGDVSEVSIKGSNGEWKSMSRVWGQNWLTGENLVGRSLSFKVTTSDGKVVEFDEVAPSGWQFGQSYEAHTNF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11353g00001 253 Gene3D - 16 156 IPR036908 -
Vium11353g00001 253 SMART dpbb_1 64 150 IPR007112 -
Vium11353g00001 253 CDD DPBB_EXPA_N 29 155 - -
Vium11353g00001 253 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Vium11353g00001 253 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Vium11353g00001 253 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Vium11353g00001 253 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Vium11353g00001 253 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Vium11353g00001 253 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Vium11353g00001 253 PANTHER EXPANSIN-A15 10 249 IPR002963 GO:0009664
Vium11353g00001 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 160 IPR007112 -
Vium11353g00001 253 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Vium11353g00001 253 Pfam Lytic transglycolase 64 150 IPR009009 -
Vium11353g00001 253 Gene3D - 160 253 IPR036749 -
Vium11353g00001 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Vium11353g00001 253 SUPERFAMILY PHL pollen allergen 157 248 IPR036749 -
Vium11353g00001 253 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Vium11353g00001 253 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Vium11353g00001 253 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Vium11353g00001 253 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Vium11353g00001 253 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Vium11353g00001 253 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Vium11353g00001 253 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Vium11353g00001 253 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Vium11353g00001 253 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Vium11353g00001 253 SUPERFAMILY Barwin-like endoglucanases 19 178 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11353g00001 Vium-Chr11353 1446 3482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11353g00001 27 253 Expansin Gene Family AT5G39280 61.674 1.60e-110 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11353g00001 - - gsj:114422475 435.261