LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium11351g00003	ATGAGTAGACGCTCGAGCAGAACTGTCTACGTTGGGAACCTTCCTGGTGACATCCGTGAAAGAGAAGTTGAAGATTTATTTCTGAAGTATGGACACATAACTCACATAGATCTAAAGGTTCCCCCAAGACCCCCCGGTTACGCATTTGTAGAGTTTGAAGATGCTCAAGACGCTGAGGATGCAATACGTGGACGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGCCTGCACATGGTGGACGTGGTCATTCATCCTCAAGAGATCGACACAGCAGTCACAGCAATGGACGGGCTGGACGTGGGGTATCCAGACGCTCTGAATATCGGGTTCTAGTCACTGGATTGCCCTCTTCAGCATCCTGGCAGGATCTTAAGGATCACATGCGCAAGGCAGGAGATGTTTGCTTTTCCCAGGTCTTTCATGATGGAAGGGGTACTACTGGTATTGTGGATTACACAAATTATGATGATATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTTCGGAATGCATTTTCCAAGGGTTATGTTCGAGTGAGGGAATATGATTCAAGACGGGATTCATCTAGAAGTCCTAGCCGGGGCCCATCTCATTCTAGAGGAAGAAGCTATAGCCGAAGCCGTAGTTACAGTCGGGACCGGAGCCAAAGCAAATCTCCAAAGGGTAAATCATCACAGCGTTCACCACCTGCTAAATCTCCATCAAGATCTCCTGCTGCCCGGTCTCGTTCAAGATCAAAGTCTCGTTCGTTGTCAGGCATACTGGAAATTGGAAATTAG	795	0.4755	MSRRSSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRHSSHSNGRAGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKGYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSYSRDRSQSKSPKGKSSQRSPPAKSPSRSPAARSRSRSKSRSLSGILEIGN	264

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium11351g00003	264	MobiDBLite	consensus disorder prediction	186	264	-	-
	Vium11351g00003	264	CDD	RRM1_SF2_plant_like	8	78	-	-
	Vium11351g00003	264	Gene3D	-	111	188	IPR012677	-
	Vium11351g00003	264	Gene3D	-	2	110	IPR012677	-
	Vium11351g00003	264	CDD	RRM2_SF2_plant_like	111	186	-	-
	Vium11351g00003	264	FunFam	serine/arginine-rich splicing factor SR34A-like	111	188	-	-
	Vium11351g00003	264	SMART	rrm1_1	8	78	IPR000504	GO:0003723
	Vium11351g00003	264	SMART	rrm1_1	112	185	IPR000504	GO:0003723
	Vium11351g00003	264	FunFam	ASF/SF2-like pre-mRNA splicing factor SRP31	1	110	-	-
	Vium11351g00003	264	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	7	82	IPR000504	GO:0003723
	Vium11351g00003	264	MobiDBLite	consensus disorder prediction	226	258	-	-
	Vium11351g00003	264	PANTHER	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	5	253	-	-
	Vium11351g00003	264	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	113	175	IPR000504	GO:0003723
	Vium11351g00003	264	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	9	76	IPR000504	GO:0003723
	Vium11351g00003	264	SUPERFAMILY	RNA-binding domain, RBD	5	175	IPR035979	GO:0003676
	Vium11351g00003	264	MobiDBLite	consensus disorder prediction	73	108	-	-
	Vium11351g00003	264	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	111	189	IPR000504	GO:0003723
	Vium11351g00003	264	MobiDBLite	consensus disorder prediction	73	107	-	-
	Vium11351g00003	264	MobiDBLite	consensus disorder prediction	211	225	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium11351g00003	Vium-Chr11351	276	4409	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium11351g00003	8	195	Eukaryotic Initiation Factors Gene Family	AT4G34110	25.381	1.53e-06	47.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium11351g00003	K12890		-	gmx:100789847	358.607