Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium11351g00002 | ATGAGTAGACGCTCGAGCAGAACTGTCTACGTTGGGAACCTTCCTGGTGACATCCGTGAAAGAGAAGTTGAAGATTTATTTCTGAAGTATGGACACATAACTCACATAGATCTAAAGGTTCCCCCAAGACCCCCCGGTTACGCATTTGTAGAGTTTGAAGATGCTCAAGACGCTGAGGATGCAATACGTGGACGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGCCTGCACATGGTGGACGTGGTCATTCATCCTCAAGAGATCGACACAGCAGTCACAGCAATGGACGGGCTGGACGTGGGGTATCCAGACGCTCTGAATATCGGGTTCTAGTCACTGGATTGCCCTCTTCAGCATCCTGGCAGGATCTTAAGGATCACATGCGCAAGGCAGGAGATGTTTGCTTTTCCCAGGTCTTTCATGATGGAAGGGGTACTACTGGTATTGTGGATTACACAAATTATGATGATATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTTCGGAATGCATTTTCCAAGGGTTATGTTCGAGTGAGGGAATATGATTCAAGACGGGATTCATCTAGAAGTCCTAGCCGGGGCCCATCTCATTCTAGAGGAAGAAGCTATAGCCGAAGCCGTAGTTACAGTCGGGACCGGAGCCAAAGCAAATCTCCAAAGGGTAAATCATCACAGCGTTCACCACCTGCTAAATCTCCATCAAGATCTCCTGCTGCCCGGTCTCGTTCAAGATCAAAGTCTCGTTCGTTGTCAGGATATGGAAACATGCAGCATACTGGAAATTGGAAATTAGGATCTTGGTGGGATTTGGTTCAATTGTCTGCAACTCATTTTGTTGTGGAGATTGGGGACCAAGGAGATCATGGATTGCCATATAGAGCTGGATTGTTTATAACCTCCAATGAGCAATAG | 930 | 0.4667 | MSRRSSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRHSSHSNGRAGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKGYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSYSRDRSQSKSPKGKSSQRSPPAKSPSRSPAARSRSRSKSRSLSGYGNMQHTGNWKLGSWWDLVQLSATHFVVEIGDQGDHGLPYRAGLFITSNEQ | 309 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium11351g00002 | 309 | Gene3D | - | 2 | 109 | IPR012677 | - | |
| Vium11351g00002 | 309 | CDD | RRM1_SF2_plant_like | 8 | 78 | - | - | |
| Vium11351g00002 | 309 | FunFam | ASF/SF2-like pre-mRNA splicing factor SRP31 | 1 | 110 | - | - | |
| Vium11351g00002 | 309 | CDD | RRM2_SF2_plant_like | 111 | 186 | - | - | |
| Vium11351g00002 | 309 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 113 | 175 | IPR000504 | GO:0003723 | |
| Vium11351g00002 | 309 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 76 | IPR000504 | GO:0003723 | |
| Vium11351g00002 | 309 | Gene3D | - | 110 | 188 | IPR012677 | - | |
| Vium11351g00002 | 309 | SMART | rrm1_1 | 8 | 78 | IPR000504 | GO:0003723 | |
| Vium11351g00002 | 309 | SMART | rrm1_1 | 112 | 185 | IPR000504 | GO:0003723 | |
| Vium11351g00002 | 309 | PANTHER | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN | 5 | 254 | - | - | |
| Vium11351g00002 | 309 | FunFam | serine/arginine-rich splicing factor SR34A-like | 111 | 188 | - | - | |
| Vium11351g00002 | 309 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 82 | IPR000504 | GO:0003723 | |
| Vium11351g00002 | 309 | MobiDBLite | consensus disorder prediction | 226 | 261 | - | - | |
| Vium11351g00002 | 309 | MobiDBLite | consensus disorder prediction | 73 | 108 | - | - | |
| Vium11351g00002 | 309 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 111 | 189 | IPR000504 | GO:0003723 | |
| Vium11351g00002 | 309 | MobiDBLite | consensus disorder prediction | 73 | 107 | - | - | |
| Vium11351g00002 | 309 | MobiDBLite | consensus disorder prediction | 186 | 261 | - | - | |
| Vium11351g00002 | 309 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 175 | IPR035979 | GO:0003676 | |
| Vium11351g00002 | 309 | MobiDBLite | consensus disorder prediction | 211 | 225 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium11351g00002 | Vium-Chr11351 | 276 | 4444 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium11351g00002 | 8 | 195 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 25.381 | 1.84e-06 | 47.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium11351g00002 | K12890 | - | cave:132187262 | 373.629 |