Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11341g00001 ATGGACTCCTCCTACCATCACTTGGACCACACTGAAGCTCATCTGCCACCAGGCTTCAGGTTCCATCCCACTGACGAGGAGCTCATAACGTACTACCTTCTCAAAAAGGTTCTAGACAGCAACTTCACTGGTAGAGCCATAGCTGAAGTAGACCTTAACAAAAGTGAACCATGGGAGCTCCCAGAGAAAGCTAAAATGGGTGAGAAAGAGTGGTACTTCTTCAGCTTACGTGACAGGAAATACCCAACTGGGTTACGAACCAATAGGGCTACCGAAGCTGGTTACTGGAAAGCCACTGGGAAAGATAGAGAGATTTACAGCTCCAAAACTTGTTCTTTGGTCGGGATGAAGAAAACCTTGGTTTTCTACCGCGGTAGAGCTCCCAAGGGGGAGAAAAGTAACTGGGTCATGCATGAGTACCGGCTGGAAGGCAAATTTGCTTACCATTACCTTTCTCGCAACTCCAAGGACGAGTGGGTCATATCTCGCGTGTTCCAAAAGAGCAACACAACCAGCGGAGGCTCAGTTATGTCTGCTTCGAGTGGCTCCAAGAAAACGAGAATGAACACCACCAACAGCACTCTCTGCCCAGAACCAAGTTCACCCTCTTCAGTTTACCTTCCGCCTCTTCTGGACTCTTCTCCCTACACCACAACAACCCCAGTAAACTTCACTGACCGTAACAACTGTTCCTACGACAGCACCACCAAAAAGGAGCACGTGTCCTGTTTCTCCACAATTGCTGCAGCCACCGCTGCTGTTGTCTCCCCCAACAACTTCACCAATGCAAGCTTCGACCTTCCACCATCTCAGCCTCTAGGAGTGGATCCCTTCGCTAGGTTTCAGAGAAACGTTGGTCTCTCCGCCTTCCCAAGTTTGAGGTCACTGCAAGACAACCTCCAGCTACCGTTCTTTTTTCCTCCGGCAGCACAGCCCTTGGGCGGTGCCTCCCGTGAACTCCTCTGGCCGATGCCGGAGGAGCAAAGGCTGGTCGATGCGGCCCCCAGCATTCCACTGGGTGTGTCGGAGCTTGATTGTATGTGGGGATACTAG 1053 0.5128 MDSSYHHLDHTEAHLPPGFRFHPTDEELITYYLLKKVLDSNFTGRAIAEVDLNKSEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNSKDEWVISRVFQKSNTTSGGSVMSASSGSKKTRMNTTNSTLCPEPSSPSSVYLPPLLDSSPYTTTTPVNFTDRNNCSYDSTTKKEHVSCFSTIAAATAAVVSPNNFTNASFDLPPSQPLGVDPFARFQRNVGLSAFPSLRSLQDNLQLPFFFPPAAQPLGGASRELLWPMPEEQRLVDAAPSIPLGVSELDCMWGY 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11341g00001 350 Gene3D NAC domain 24 172 IPR036093 GO:0003677|GO:0006355
Vium11341g00001 350 SUPERFAMILY NAC domain 11 167 IPR036093 GO:0003677|GO:0006355
Vium11341g00001 350 MobiDBLite consensus disorder prediction 170 203 - -
Vium11341g00001 350 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Vium11341g00001 350 FunFam NAC domain-containing protein 100-like 24 171 - -
Vium11341g00001 350 ProSiteProfiles NAC domain profile. 15 167 IPR003441 GO:0003677|GO:0006355
Vium11341g00001 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11341g00001 Vium-Chr11341 42708 45420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11341g00001 1 350 NAC Transcription Factor Family AT5G53950 53.846 2.43e-122 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium11341g00001 NAM 1.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11341g00001 - - vun:114185732 640.188