Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11340g00001 ATGAGGAACTTTAAGTACGTAAACACCATCAAAGCCGCAGTTGAAGAAGAATGTCCCTTGACTGTGTCATGCGCTGACATTATTGCTCTTTCTGCTAGAGATGGCATTTCCTTGTTGGGTGGACCAAGCATTGAAATGAAGACAGGGCGAAGGGATAGCAAACAAAGCTATGCAAAAGAGGTGGAAGACTTGATTCCAAACCACAATGATTCGATTTTCGTAGTGCTGTCTCGTTTTCAAGCCATTGGCATTGACGTTGAAGCCACAGTCGCTCTTTTAGGAGCTCACTCGGTAGGAAGAGTTCACTGCGTGAATCTTGTACACAGATTATATCCTACCGTGGACACAACACTTGATCCTGCACATGCTGAGTACCTGAAACGTCGGTGTCCTACACCGAATCCTGATCCAAAGGCTGTGTTGTATTCAAGGAATGACCTGAAAACGCCCATGATCATTGACAACAACTACTACAAGAACATCTTGGAACATAAGGGCCTTCTCCTGGTGGATGAAGAGCTTGCCACTGACTCAAGAACAGCACCTTACGTCCAAAAGATGGCCAATGATAATCAATATTTCCACCAGCAGTTCTCAAGGGCCATTCAATTGTTATCTGAGACCAATCCTCTACAAGGGGATCAAGGAGAAATTAGAAAGGACTGTCGCTACCTCAATGTCGATTAA 687 0.4454 MRNFKYVNTIKAAVEEECPLTVSCADIIALSARDGISLLGGPSIEMKTGRRDSKQSYAKEVEDLIPNHNDSIFVVLSRFQAIGIDVEATVALLGAHSVGRVHCVNLVHRLYPTVDTTLDPAHAEYLKRRCPTPNPDPKAVLYSRNDLKTPMIIDNNYYKNILEHKGLLLVDEELATDSRTAPYVQKMANDNQYFHQQFSRAIQLLSETNPLQGDQGEIRKDCRYLNVD 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11340g00001 228 Gene3D - 2 223 - -
Vium11340g00001 228 FunFam Peroxidase 66 205 - -
Vium11340g00001 228 SUPERFAMILY Heme-dependent peroxidases 2 226 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium11340g00001 228 ProSiteProfiles Plant heme peroxidase family profile. 1 226 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium11340g00001 228 PANTHER - 3 226 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11340g00001 228 Gene3D Peroxidase, domain 2 67 206 - -
Vium11340g00001 228 PRINTS Haem peroxidase superfamily signature 22 39 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium11340g00001 228 PRINTS Haem peroxidase superfamily signature 146 161 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium11340g00001 228 PRINTS Haem peroxidase superfamily signature 40 52 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium11340g00001 228 PRINTS Haem peroxidase superfamily signature 88 103 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium11340g00001 228 CDD secretory_peroxidase 1 223 IPR033905 GO:0004601|GO:0042744
Vium11340g00001 228 PRINTS Plant peroxidase signature 40 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11340g00001 228 PRINTS Plant peroxidase signature 144 159 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11340g00001 228 PRINTS Plant peroxidase signature 21 31 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11340g00001 228 PRINTS Plant peroxidase signature 2 15 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11340g00001 228 PRINTS Plant peroxidase signature 160 177 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11340g00001 228 PRINTS Plant peroxidase signature 87 99 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11340g00001 228 Pfam Peroxidase 3 190 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11340g00001 Vium-Chr11340 35 1331 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11340g00001 1 226 Peroxidase AT2G37130 75.771 5.47e-131 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11340g00001 K00430 - gmx:100811277 417.542