Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11320g00003 ATGAGCAAAGCCTTGGGAGAAGAAGAAGACGAAGAAGAACAAGAACGCGACAGAGACCAAGACCAAGACCAAGACTGTTTCTACGACTCAAACGACCGTTTACTCTCTCTCTCCTCCTCCTGCTCATGCTCCAATTCCAACTCCGACAACGACGAAACCGAGAACGAAACCCAACCCCATCGAAACGACACACTCCCCAATTTCCCCCTAACCAACAACTACGACATATGGATCTCCCAACCCACCTCTGTCTCCGAGCGCCGCACGCGCCTCCTACTATCACTCGGCCTCTCCTCCCTCACGCGCCAAAACCCTCACCCTCCCCCACGCGATCGCGTTTCCCCAATCCGATCCAAATCCGACGCCACGACCACCAACACGACTTCCGCCGGCGCCGCCACATCATCCTCCGCCGGCGCCGCCAATCCTAGGCCCCCGAACCCCAAACCTCCTTCCGAGGAGCTCTGCACGATACGCGATCTCGACAACGGGAAGGAGTTCGTGGTGAACGATTGGGAGAATCTGCGGGAGGTTGCCACGGGGAGGCACTTGACGATGGAGGAGTTCGAGATGACGGTGGGGCACTCTCCCATCGTTCAGGAGTTAATGCGGAGGCAGAATGTTGAAGAGGCTAGCGTCGATTCCAATGCGAGTGGCTCCAAGGTGAAGAAGAAAGGAGGGGGGTGGTTGAAGAGTATCAAGAGTGTCGCGAGCTCCGTCGCCGGGTACAGGGATCGACGGAGCAGCGATGAGAGGGACACCTCGTCGGAGAAGGGCGGCCGGCGGTCCAGCTCCGCCACCGACGACAGCCAGGACGCGGCGTTTCATGGTCCGGAGAGGGTGAGAGTGAAGCAGTATGGGAAGAGTTGCAAGGAGGTGACGGCGCTTTACAAGAGCCAGGAGATTCAGGCGCATAGTGGGTCTATTTGGAGCATTAAGTTTAGTTTGGATGGGAAGTATTTAGCAAGTGCTGGTGAGGATTGCGTGATTCATGTGTGGCAGGTGGTGGAGGGGGAGAGGAAGGGGGAGCTGCTGCTGCTCGATAGGGAGAAGGGGGAAGATGGGGGGAGTGTGAATATGTTTTTGGTGGTGAATGGGTCGCCGGAGCCGACGGCTGCGGCAATGCTGTCTCCGCTCAGGGATGTGGAGAGGAAGAGGAAGGGGAGGTCCAGCGTGAGTAGGAAATCCTTGAGCCTCGACCAGTTTGTCGTGCCGCAGACCGTGTTTGCACTCACTGACAAACCAGTTTGCTCCTTTCAGGGACATCTGCATGATGTTCTTGACCTCTCATGGTCTAAGTCTCAGCACTTGCTCTCATCTTCAATGGACAAAACTGTGCGGCTGTGGCATCTGTCTAGCAACTCTTGTTTGAAAATATTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGACAGATCTACATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGCCAGGGTGCACTGGTTGGTTCATACAAGGGTAGCTGCCACTTATATAATACATCTGAAAATAAGTTGCAACAGAAGAGTCAGATCAATCTGCAAAACAAGAAAAAGAAATCACATCATAAGAAAATTACTGGTTTCCAGTTTGCCCCTGGAAGTTCATCAGAAGTACTTATCACATCTGCTGACTCAAGAATACGGGTCGTTGATGGTGTAGATCTGGTCCATAAGTTTAAAGGCTTTCGGAATGCAACTAGCCCAATTTCAGCATCCCTCACAGCAAATGGTAAATATGTTGTCGCAGCAAGTGAGGACTCTCATGTATACATCTGGAAAAATGAGGCTGATTGCAGGCCGAACAGAAGCAAAGGTGTCACTGTCACACGATCATATGAACATTTTCACTGTAAAGATGTGTCAGTGGCCATTCCCTGGCCTGGTATGGGTGATGCATGGGACATGCATGATACATTTTCTGGAGAGCAACCCGAGCTTGATAACAATGCTGATGATGTCGCATCAGCCAATCATCCTCCTACCCCTGTAGAGGAAAACTTTGTCACCGAGGGTTCAAGATCTGCATCTGGTTACCACAACAGTCCACGCCATGCAACCATTGCAAGTGCCACAAATAGTTACTTTTTTGATAGAATTTCTGCAACATGGCCAGAGGAAAAACTTCTTCTGGCTGCAAGAAACCAAAGCCCTCGTGTGAGTATGGATTTCTCTAATGGGGCAAGTCAAAAAATGTCAGCCTGGGGTATGGTGATTGTAACTGCCGGCCTTCGAGGGGAAATCAGAACTTTCCAAAATTTTGGATTGCCACTTCGGATATAA 2382 0.5084 MSKALGEEEDEEEQERDRDQDQDQDCFYDSNDRLLSLSSSCSCSNSNSDNDETENETQPHRNDTLPNFPLTNNYDIWISQPTSVSERRTRLLLSLGLSSLTRQNPHPPPRDRVSPIRSKSDATTTNTTSAGAATSSSAGAANPRPPNPKPPSEELCTIRDLDNGKEFVVNDWENLREVATGRHLTMEEFEMTVGHSPIVQELMRRQNVEEASVDSNASGSKVKKKGGGWLKSIKSVASSVAGYRDRRSSDERDTSSEKGGRRSSSATDDSQDAAFHGPERVRVKQYGKSCKEVTALYKSQEIQAHSGSIWSIKFSLDGKYLASAGEDCVIHVWQVVEGERKGELLLLDREKGEDGGSVNMFLVVNGSPEPTAAAMLSPLRDVERKRKGRSSVSRKSLSLDQFVVPQTVFALTDKPVCSFQGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSNSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNATSPISASLTANGKYVVAASEDSHVYIWKNEADCRPNRSKGVTVTRSYEHFHCKDVSVAIPWPGMGDAWDMHDTFSGEQPELDNNADDVASANHPPTPVEENFVTEGSRSASGYHNSPRHATIASATNSYFFDRISATWPEEKLLLAARNQSPRVSMDFSNGASQKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11320g00003 793 FunFam Transducin/WD40 repeat-like superfamily protein 260 367 - -
Vium11320g00003 793 FunFam WD repeat-containing protein 44 400 666 - -
Vium11320g00003 793 Gene3D - 245 370 IPR015943 GO:0005515
Vium11320g00003 793 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 343 IPR001680 GO:0005515
Vium11320g00003 793 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 302 335 - -
Vium11320g00003 793 PRINTS G protein beta WD-40 repeat signature 321 335 IPR020472 -
Vium11320g00003 793 PRINTS G protein beta WD-40 repeat signature 479 493 IPR020472 -
Vium11320g00003 793 PRINTS G protein beta WD-40 repeat signature 437 451 IPR020472 -
Vium11320g00003 793 MobiDBLite consensus disorder prediction 99 155 - -
Vium11320g00003 793 MobiDBLite consensus disorder prediction 29 52 - -
Vium11320g00003 793 SUPERFAMILY WD40 repeat-like 297 628 IPR036322 GO:0005515
Vium11320g00003 793 ProSiteProfiles Trp-Asp (WD) repeats profile. 459 493 IPR001680 GO:0005515
Vium11320g00003 793 SMART WD40_4 453 492 IPR001680 GO:0005515
Vium11320g00003 793 SMART WD40_4 412 450 IPR001680 GO:0005515
Vium11320g00003 793 SMART WD40_4 540 585 IPR001680 GO:0005515
Vium11320g00003 793 SMART WD40_4 295 334 IPR001680 GO:0005515
Vium11320g00003 793 SMART WD40_4 586 627 IPR001680 GO:0005515
Vium11320g00003 793 SMART WD40_4 495 533 IPR001680 GO:0005515
Vium11320g00003 793 Gene3D - 380 650 IPR015943 GO:0005515
Vium11320g00003 793 MobiDBLite consensus disorder prediction 1 73 - -
Vium11320g00003 793 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 419 453 - -
Vium11320g00003 793 ProSiteProfiles Trp-Asp (WD) repeats profile. 419 459 IPR001680 GO:0005515
Vium11320g00003 793 MobiDBLite consensus disorder prediction 118 142 - -
Vium11320g00003 793 MobiDBLite consensus disorder prediction 244 265 - -
Vium11320g00003 793 Pfam WD domain, G-beta repeat 455 492 IPR001680 GO:0005515
Vium11320g00003 793 Pfam WD domain, G-beta repeat 590 627 IPR001680 GO:0005515
Vium11320g00003 793 Pfam WD domain, G-beta repeat 414 449 IPR001680 GO:0005515
Vium11320g00003 793 Pfam WD domain, G-beta repeat 301 333 IPR001680 GO:0005515
Vium11320g00003 793 PANTHER WD REPEAT DOMAIN 44 19 790 IPR040324 -
Vium11320g00003 793 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 459 493 - -
Vium11320g00003 793 MobiDBLite consensus disorder prediction 241 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11320g00003 Vium-Chr11320 14100 20121 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11320g00003 407 624 U-box Gene Family AT1G04510 27.311 3.75e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11320g00003 K20241 - gmx:100815065 1261.13