Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1130g00011 ATGGGTAGAGCTCCTTGCTGTGACAAGGCAAATGTAAAGAAAGGACCATGGTCACCAGAAGAAGATGCAAAGCTAAAGGACTACATAGACCAACATGGCACCGGAGGGAATTGGATTGCCCTCCCCCAAAAAGTTGGTTTGAAAAGATGTGGCAAGAGCTGTCGATTAAGGTGGCTTAATTATCTTAGACCCAACATCAAGCATGGTCAATTTTCTGTTGAAGAAGATAAAATAATCTGTAGCCTCTTTGCTAGCATTGGAAGCAGGTGGTCCATAATAGCATCTCAGCTGCCAGGGAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGCTTAAGAAGAAAATGACGGCCATGAATCCTTCTCCCCAGAAGAAGCCTCTTCAAATGACCCTTTTATCCATCCTTGAAAGCTCAACATCATTGTCATTCAGAGACAACAGCAGCAACAACAATAACTCATACTACCATCCCCACGGTTCTTTCACAGGCGTCGGCTCCTTTTCCTACTCTTCGTGTCTTCTGAGTGGAAACAACTCTTCTGCTTCTGCTGATTCCTTCTTTCAAGCACAAGAGAGTTTCATGGACCCCACCCAGAAGGGCCAATTCAAAGGTAGCAGCAGCAATAGCATGCTTGTGTTCGGTGGTGAAGCCACAGCCACCAGTTGCAGCTCTTCTGATGCGAGCTGCAACAACCAGATCAGACAAATCACGGAGCCAGAATTTGGCGAGGCGAGCTTTGTGGAGCAGATAGGTGTTGCTGATAATCCCCTCTACATTGGGGTGGAAAATACTACTAACAAGTTGATGATGTTCTCCAGTGGTGGCAGTGCTAGTGTCAGTGGGTGGACAGACAAACAAAATGGATTGTGGGAACAAAATCCGTTGGATTATAGTCTAGAGGAAATTAAACAGCTTATTAGCACTAATAACAGTTTTAACAACTTTTTGTTTGATGATAAGAAGACAGAAGAAAGGTTCACGTATTACTGA 996 0.4428 MGRAPCCDKANVKKGPWSPEEDAKLKDYIDQHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSVEEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMTAMNPSPQKKPLQMTLLSILESSTSLSFRDNSSNNNNSYYHPHGSFTGVGSFSYSSCLLSGNNSSASADSFFQAQESFMDPTQKGQFKGSSSNSMLVFGGEATATSCSSSDASCNNQIRQITEPEFGEASFVEQIGVADNPLYIGVENTTNKLMMFSSGGSASVSGWTDKQNGLWEQNPLDYSLEEIKQLISTNNSFNNFLFDDKKTEERFTYY 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1130g00011 331 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vium1130g00011 331 SMART sant 13 64 IPR001005 -
Vium1130g00011 331 SMART sant 67 115 IPR001005 -
Vium1130g00011 331 CDD SANT 71 113 IPR001005 -
Vium1130g00011 331 Gene3D - 7 68 - -
Vium1130g00011 331 Gene3D - 69 132 - -
Vium1130g00011 331 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vium1130g00011 331 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vium1130g00011 331 PANTHER OS09G0431300 PROTEIN 1 306 - -
Vium1130g00011 331 CDD SANT 16 62 IPR001005 -
Vium1130g00011 331 FunFam Transcription factor RAX3 7 68 - -
Vium1130g00011 331 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vium1130g00011 331 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vium1130g00011 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vium1130g00011 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1130g00011 Vium-Chr1130 124219 126041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1130g00011 1 117 MYB Transcription Factor Family AT5G57620 89.744 1.63e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium1130g00011 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1130g00011 K09422 - gmx:778084 490.345