Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1130g00010 ATGTCAAAAGATTCTGAGGAGATAAAAACCATAGAGCAGTGGAAATGGTCAGAAATGCAAGGCCTTGAGCTTGTTCCTGATGCTGCAACTTCACAACAACAACAAGACCAAGTTCCAAGGGAAATGGAGACTGCTCGTGAACAACCCAACAAAGATGCTGCTGCTGCTGCGGTTACTGTGAACGGTGGTTCCATTGGTGGGGAGAAGGCAGAGAGTGTTCCCTCTGTTGGGTTCGGAGAGCTTTTCAGATTCGCTGATGGGTTGGATTATGTTCTCATGGGAATTGGAACGGTTGGAGCAGTTGTGCACGGCTGTTCACTGCCTATATTTCTTCGCTTCTTTGCGGATCTTGTCAATTCCTTTGGCTCCAATGCTAATGATGTGGACAAGATGACTCAGGAAGTGGTTAAGTATGCATTTTACTTCCTGGTGGTGGGGGCTGCAATATGGGCATCATCCTGGGCAGAGATTTCGTGTTGGATGTGGAGTGGGGAGCGTCAATCCACCAAGATGAGAATCAAGTATCTGGAGACTGCGTTGAACCAGGACATTCAGTTCTTCGACACCGATGTGCGGACTTCCGATGTTGTTTTCGCCATCAACAGCGATGCTGTCATGGTCCAGGATGCCATTAGTGAGAAGTTGGGGAATTTCATCCACTACATGGCTACGTTTGTTTCTGGCTTTGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCTCTGGTCACTCTTGCTGTTGTTCCTATGATAGCTGTGATTGGAGGCATTCACACCACCACCTTGGCCAAGCTCTCTGGCAAGAGCCAGGAAGCTCTCGCTCAAGCTGGCAACATTGTGGAACAGACGGTTGCACAAATCCGAGTGGTGCTGGCCTTCGTTGGGGAGTCCAGAGCATTACAGGCCTATTCATCAGCCTTGAGGGTTGCACAGAAGCTTGGTTACAAAACTGGGTTTGCGAAGGGAATGGGATTGGGGGCCACCTACTTTGTTGTTTTCTGCTGTTATGCGCTTCTGCTATGGTATGGAGGTTATCTTGTTAGGCACCATGCCACCAATGGAGGACTTGCCATTGCAACCATGTTTGCTGTCATGATCGGTGGATTGGGTTTGGGGCAATCTGCACCAAGCATGGCTGCATTTACGAAGGCCAGAGTAGCTGCTGCAAAGATTTTCCGTATAATTGATCACAAGCCGAGTATTGATAGAAATAGCGAATCTGGCATTGAACTAGAGACTGTTACTGGACTTGTGGAACTGAAAAATGTAGACTTTTCTTACCCATCTAGGCCAGAGGTTCGGATCCTCAATGATTTCTCCTTGAATGTGCCTGCTGGCAAAACCATAGCTCTCGTGGGTAGCAGCGGCTCTGGTAAGAGCACTGTTGTCTCCCTCATTGAGAGATTCTATGACCCAACTTCAGGACAAGTTCTATTAGATGGGCATGACATTAAAACTTTGAAGCTTAGATGGTTGAGGCAGCAGATAGGATTAGTGAGCCAAGAGCCAGCTTTGTTTGCAACCACAATACGAGAAAATATACTGTTGGGTAGGCCTGATGCAAACCAGGTTGAGATTGAAGAAGCTGCTAGGGTTGCTAATGCGCATTCCTTCATCATTAAACTTCCTGAAGGCTATGAAACCCAGGTCGGAGAAAGAGGGCTGCAACTTTCTGGAGGGCAAAAACAGAGAATAGCAATAGCAAGGGCAATGCTGAAAAACCCTGCAATTCTTCTCCTAGATGAAGCAACAAGTGCATTGGACTCAGAGTCAGAAAAACTGGTGCAAGAAGCCCTTGACCGGTTCATGATTGGCAGAACAACTCTTGTCATTGCCCATCGCCTCTCCACAATTCGCAAAGCTGATCTTGTTGCTGTTCTTCAGCAAGGAAGTGTTTCTGAAATTGGAACTCATGATGAGCTGTTCTCAAAAGGTGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAGATGGCTCATGAAACTGCCATGAGTAATGCCAGAAAGAGCAGTGCAAGGCCTTCAAGTGCCAGAAACTCTGTCAGCTCACCAATAATTGCTAGGAATTCTTCTTACGGACGGTCACCATACTCGCGTAGGCTGTCTGATTTCTCTACATCTGATTTTAGTCTCTCCCTAGATGCATCACATTCAAATTACAGGCTTGAAAAGCTGGCTTTCAAGGAGCAAGCTAGTTCCTTCTGGAGACTTGCAAAAATGAACTCTCCCGAATGGCTTTATGCTTTGATTGGCTCCATAGGATCTGTTATTTGTGGATCTCTCAGTGCCTTCTTTGCTTATGTTCTTAGTGCTGTCCTCAGTGTGTACTACAATCCAGACCACAGATACATGATCCGTGAAATAGAAAAGTACTGTTACTTGTTGATTGGACTTTCATCAACCGCACTTCTCTTCAACACACTGCAACATTTCTTCTGGGACATTGTTGGGGAAAATCTTACCAAACGTGTGAGGGAGAAAATGCTTACGGCGGTGCTAAAAAATGAAATGGCGTGGTTTGATCAGGAGGAAAATGAGAGTGCCAGGATTGCCGCAAGGCTGGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATCGAATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTTGCCTGTACTGCAGGCTTTGTGTTGCAGTGGCGCCTTGCCCTTGTCCTCGTAGCTGTCTTCCCTATTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTTATGACTGGTTTCTCTGGTGACCTGGAAGCTGCTCATGCGAAGGCTACACAACTAGCAGGAGAAGCTATAGCCAATGTAAGGACTGTTGCAGCCTTCAATTCAGAAAGAAAAATTGTGGGTCTTTTCACCTCCAATCTCCAGGCTCCACTAAAGCGTTGCTTTTGGAAGGGACAAATTTCTGGAAGTGGATATGGTGTAGCTCAGTTTGCACTTTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTAGTGAAGCATGGCATCTCTGACTTCTCTAAAACAATCCGAGTTTTTATGGTCCTAATGGTTTCTGCAAACGGTGCTGCTGAAACTTTAACACTTGCTCCTGACTTTATCAAAGGAGGCCGAGCCATGAAGTCAGTCTTTGAACTCCTTGACCGTAGGACTGAAATTGAACCCGATGATCAAGATGCCACTCCTTTTCCTGATCGTCTCCGTGGTGAAGTTGAACTTAAGCATGTAGATTTCTTCTATCCAACTCGCCCTGACATGCCAGTTTTTCGAGACCTCAGTCTTCGTGCAAGGGCTGGCAAAACTCTTGCCCTTGTAGGACCTAGTGGCTGTGGTAAGAGCTCAGTTATTGCACTTATACAGAGATTCTATGATCCAACATCTGGTCGGGTCATGATTGATGGCAAGGACATAAGGAAATACAATCTGAAGTCCTTAAGAAGGCACATTTCAGTGGTACCTCAGGAGCCATGCTTGTTTGCTACTACAATTTATGAAAACATTGCTTATGGGCATGAGTCAGCCAGTGAAGCTGAGATAATTGAAGCTGCAACTCTTGCCAATGCACACAAGTTCATATCTGCTTTGCCTGATGGATACAAAACATTTGTTGGGGAGAGAGGTGTTCAGCTATCAGGAGGACAAAAGCAAAGAATAGCAGTAGCTCGAGCTTTTGTGAGGAAAGCTGAGCTTATGCTTCTTGATGAGGCCACAAGTGCACTTGATGCTGAATCTGAGAGGTCGGTTCAGGAGGCTCTAGACCGTGCCTCCTCTGGAAAAACAACCATCATCGTTGCACACAGGCTATCAACTATAAGGAATGCCAATCTGATTGCTGTGATTGATGATGGCAAAGTGGCTGAGCAAGGCTCCCATTCACAGTTGTTGAAAAATCACCCCGATGGGATTTATGCACGCATGATTCAGTTGCAAAGGTTCACACACACCCAAGTCATTGGAATGGCCTCAGGTTCAAGTTCTTCAACAAGACCAAAAGATGATGAAAGAGAAGGCTAG 4017 0.46 MSKDSEEIKTIEQWKWSEMQGLELVPDAATSQQQQDQVPREMETAREQPNKDAAAAAVTVNGGSIGGEKAESVPSVGFGELFRFADGLDYVLMGIGTVGAVVHGCSLPIFLRFFADLVNSFGSNANDVDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWSGERQSTKMRIKYLETALNQDIQFFDTDVRTSDVVFAINSDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGGIHTTTLAKLSGKSQEALAQAGNIVEQTVAQIRVVLAFVGESRALQAYSSALRVAQKLGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAAKIFRIIDHKPSIDRNSESGIELETVTGLVELKNVDFSYPSRPEVRILNDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDANQVEIEEAARVANAHSFIIKLPEGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEMAHETAMSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHSNYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVICGSLSAFFAYVLSAVLSVYYNPDHRYMIREIEKYCYLLIGLSSTALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPIVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSERKIVGLFTSNLQAPLKRCFWKGQISGSGYGVAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMKSVFELLDRRTEIEPDDQDATPFPDRLRGEVELKHVDFFYPTRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHESASEAEIIEAATLANAHKFISALPDGYKTFVGERGVQLSGGQKQRIAVARAFVRKAELMLLDEATSALDAESERSVQEALDRASSGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFTHTQVIGMASGSSSSTRPKDDEREG 1338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1130g00010 1338 FunFam ABC transporter B family member 1 80 415 - -
Vium1130g00010 1338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 656 IPR027417 -
Vium1130g00010 1338 CDD ABC_6TM_Pgp_ABCB1_D2_like 738 1054 - -
Vium1130g00010 1338 Pfam ABC transporter 435 584 IPR003439 GO:0005524
Vium1130g00010 1338 FunFam ABC transporter B family member 1 407 657 - -
Vium1130g00010 1338 CDD ABC_MTABC3_MDL1_MDL2 417 656 - -
Vium1130g00010 1338 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1074 1308 IPR003439 GO:0005524
Vium1130g00010 1338 FunFam ABC transporter B family member 1 728 1037 - -
Vium1130g00010 1338 MobiDBLite consensus disorder prediction 25 52 - -
Vium1130g00010 1338 ProSitePatterns ABC transporters family signature. 556 570 IPR017871 GO:0005524|GO:0016887
Vium1130g00010 1338 Gene3D ABC transporter type 1, transmembrane domain 728 1037 IPR036640 GO:0005524|GO:0016020
Vium1130g00010 1338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1063 1311 IPR027417 -
Vium1130g00010 1338 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 417 653 IPR003439 GO:0005524
Vium1130g00010 1338 Gene3D ABC transporter type 1, transmembrane domain 1038 1315 IPR036640 GO:0005524|GO:0016020
Vium1130g00010 1338 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 749 1036 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1130g00010 1338 ProSitePatterns ABC transporters family signature. 1211 1225 IPR017871 GO:0005524|GO:0016887
Vium1130g00010 1338 SUPERFAMILY ABC transporter transmembrane region 736 1056 IPR036640 GO:0005524|GO:0016020
Vium1130g00010 1338 FunFam ABC transporter B family member 19 1038 1060 - -
Vium1130g00010 1338 CDD ABC_MTABC3_MDL1_MDL2 1072 1311 - -
Vium1130g00010 1338 CDD ABC_6TM_Pgp_ABCB1_D1_like 93 390 - -
Vium1130g00010 1338 Gene3D - 1061 1312 IPR027417 -
Vium1130g00010 1338 Gene3D - 407 657 IPR027417 -
Vium1130g00010 1338 SMART AAA_5 444 630 IPR003593 GO:0016887
Vium1130g00010 1338 SMART AAA_5 1099 1291 IPR003593 GO:0016887
Vium1130g00010 1338 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 95 382 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1130g00010 1338 Pfam ABC transporter transmembrane region 750 1019 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1130g00010 1338 Pfam ABC transporter transmembrane region 94 367 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1130g00010 1338 Pfam ABC transporter 1091 1239 IPR003439 GO:0005524
Vium1130g00010 1338 FunFam ABC transporter B family member 1 1062 1312 - -
Vium1130g00010 1338 SUPERFAMILY ABC transporter transmembrane region 81 401 IPR036640 GO:0005524|GO:0016020
Vium1130g00010 1338 Gene3D ABC transporter type 1, transmembrane domain 80 670 IPR036640 GO:0005524|GO:0016020
Vium1130g00010 1338 PANTHER ABC TRANSPORTER B FAMILY 66 798 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1130g00010 Vium-Chr1130 91615 98277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1130g00010 68 1333 Calmodulin-binding Proteins AT2G36910 89.582 0.0 2322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1130g00010 K05658 - gmx:100814667 2435.22