Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1130g00007 ATGGGTAAAACATGTACAACTTGTTCTTGGGGACTGTGGATGGGAGGGGTTGGAGTACTGGTGCATGTGATGAGGAAACTACAAACCTCTTTCTCACGTTCAAAAGGGGTGAAGCAGGGCCATTTTGTGGTGATTGCAACTCGAGGGTGGAAGCCTGAGAGATTCTTCATTGAATTGGGGTATTTAGATCACCCTGACTTTGTGAAGTTGTTAGAGCAAGCTGAAGAAGAGTTTGGGTTCTCTCAGGTGGGAGCACTTGCAATCCCTTGCCAACCTGATGAACTCAAGAGAATCATTGGAAGGGAAAATAATAGGAACAAGGGCATTACCTGTTGGGTTAAAGGGATTACACTTGCATGA 360 0.4528 MGKTCTTCSWGLWMGGVGVLVHVMRKLQTSFSRSKGVKQGHFVVIATRGWKPERFFIELGYLDHPDFVKLLEQAEEEFGFSQVGALAIPCQPDELKRIIGRENNRNKGITCWVKGITLA 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1130g00007 119 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 32 98 IPR003676 GO:0009733
Vium1130g00007 119 Pfam Auxin responsive protein 32 99 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1130g00007 Vium-Chr1130 55789 56556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1130g00007 15 108 Calmodulin-binding Proteins AT2G24400 36.170 2.39e-11 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1130g00007 - K14488 gmx:100795119 180.259