Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1130g00006 ATGGAGGTTGGAAAGAAGAAGATGCTCAAGTCTTTGATCTCAAAGGTGATGAAGGGTGTTCCGTTCTTGGCACCCAATGGAGCACGTTCGAGAAGGGTTTGTTATGTGAGTGACATTGACGAGGAAAGGGAAAATGCGACGAGGGTGCCAGAAGATGTTAAGGAAGGACATTTTGCTGTTATTGCAATTCACGGTGAAGAGACCAAAAGGTTCGTTGTTGAGTTAGATTATTTAACTGATCCTGCTTTCTTGAAGCTGCTGGAGCAAGCCAGTGAAGAGTATGGCTTTCAACAAAAGGGTGCACTTGTAGTTCCTTGCAGCCCTCAAGAACTTCAGAAGATTATAGACAACAAACGACTCGATGTCACTTCCTAA 375 0.44 MEVGKKKMLKSLISKVMKGVPFLAPNGARSRRVCYVSDIDEERENATRVPEDVKEGHFAVIAIHGEETKRFVVELDYLTDPAFLKLLEQASEEYGFQQKGALVVPCSPQELQKIIDNKRLDVTS 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1130g00006 124 Pfam Auxin responsive protein 18 115 IPR003676 GO:0009733
Vium1130g00006 124 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 36 114 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1130g00006 Vium-Chr1130 43284 43955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1130g00006 38 106 Calmodulin-binding Proteins AT5G20810 44.928 6.27e-14 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1130g00006 - K14488 gmx:102661602 201.445