Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium112g00006 ATGACCACTGCTATGGAGGTAGAGCGTGACAAGTACAAGATGATCGATTTCGAAGAAACCGAGTTGCGACTCGGGTTGCCGCTGAGTTCAAACGACAGCGATTCCACGCTCATCAGAAACACTTCCGGTTGTTCCTTTACCGGGAAGAGAGGGTTTTCCGATACAAGCAGCGGTAGCGTGGATTTGAAGCTTAACCTTTCCTCAACCTCAAACAATGTCTCCGCCTCTTCCTCTTCTGACATGGCCAAAGAGAACAACGCTTCTGCAGCTGCTAACATCACCACACCTCCTTCTCCTGCTCCTGTCAAGGACCCAGCAAAGCCACCTGCAAAGGCACAAGTGGTAGGTTGGCCTCCTGTGAGATCATTCAGAAAGAACATCGTGAACAATGTTCAAAAGGGCAACAACAGCAGCAACAAAGAGGGGGTAAAAGGTGGCGCAAGTAGCAGCAGCAGTGGGAACACAGGAGCAGCTTTTGTTAAGGTGAGCATGGACGGTGCTCCTTATCTACGTAAGGTAGATTTGAAGGTGTACAAGAGCTACCAAGAGCTGTCGGATTCCCTTGCAAAAATGTTCAGTTCATTCACCATTGACAAGTGTGGATCCCAAGGCATGAAAGACTTCATGAACGAGACCAAATTGATTGATTTTCTCAACGGCTCTGATTACGTTCCCACCTACGAAGACAAAGATGGAGACTGGATGCTCGTCGGTGACGTACCCTGGGAAATGTTCGTGGAATCCTGCAAGCGTCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGCACCGAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAG 828 0.4891 MTTAMEVERDKYKMIDFEETELRLGLPLSSNDSDSTLIRNTSGCSFTGKRGFSDTSSGSVDLKLNLSSTSNNVSASSSSDMAKENNASAAANITTPPSPAPVKDPAKPPAKAQVVGWPPVRSFRKNIVNNVQKGNNSSNKEGVKGGASSSSSGNTGAAFVKVSMDGAPYLRKVDLKVYKSYQELSDSLAKMFSSFTIDKCGSQGMKDFMNETKLIDFLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium112g00006 275 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 262 IPR003311 GO:0005634|GO:0006355
Vium112g00006 275 SUPERFAMILY CAD & PB1 domains 148 256 - -
Vium112g00006 275 ProSiteProfiles PB1 domain profile. 157 257 IPR000270 GO:0005515
Vium112g00006 275 MobiDBLite consensus disorder prediction 69 95 - -
Vium112g00006 275 Pfam AUX/IAA family 19 266 IPR033389 -
Vium112g00006 275 MobiDBLite consensus disorder prediction 69 114 - -
Vium112g00006 275 FunFam Auxin-responsive protein 152 267 - -
Vium112g00006 275 Gene3D - 152 269 - -
Vium112g00006 275 MobiDBLite consensus disorder prediction 130 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium112g00006 Vium-Chr112 50992 53660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium112g00006 139 260 B3 DNA Binding Superfamily AT5G20730 28.689 7.74e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium112g00006 AUX_IAA 1.6e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium112g00006 K14484 - gmx:100796888 345.125