Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium112g00003 ATGGAAAGGGTGTTGTCAGTGGATGAAATATCGGAGCAATATTGGGTGGCGGCGAAGAAGGAATCATGCAAGTCAAAGTCAAAGATGAACCGTAGTGAATCGGAATGGGCCTTTCAGCAGTTTCTTCAGGAAGCAGTTTCTCCTTCTTCATCTTCTTCCTCCGACGTTAAACCCAAAAAGGATCCCGACATCAACATGAACATCCCTGTAACTCTAAATGTCGATTCCCACGATTACCAAACCATTCTTAAAACCAAGCTTAACCTCGCTTGTGCTGCTGTCGCTTTGACTCGGGGATCTTTGGTCAAATCTCAAAATCCGACCACTTTCCCTGACAGTGGATCACAGGCAGCTGTTCCTTCTGAAGTTGGAACCTTGAAAGATGTGGAAGCAGCAACTGGGATTTCATTCTCATCACCTTCCCTGCAAAAGAAACCTGCTGTTGCAGTGAGGCCAACATTAAGTGCATCATCAAGAGAGCAATCAGATGATGAGGAAGCGGAGGAAGAGATTAACATGACTGGAAAAATGAATACAACTGATGCAAAACGAGTAAGGAGGATGCTTTCCAATAGGGAGTCTGCCAGACGCTCAAGGAGAAGAAAGCAGGCTCATTTAAGTGAGCTGGAGACACAGGTCTCCCAATTAAGAGGTGAAAATTCTTCCTTGTTAAAGCGCTTAACTGACGTGAACCACAGATACAACAGTGCTGCAGTTGACAACAGAGTATTGAAAGCTGATGTTGAAACGTTAAGAGCTAAGGTGAAGATGGCTGAAGAGACAGTGAAAAGAATTTCTGGGTTGAATCCAATGTTTCATGCAATGACTGAGATGTCATCAATGGAAATAGCAATGTTTGATGAAAGTCGTTCTGAGACATCAGGTGGTGGTGCTGTTCCTGTGCAAGAAGACACAAATCATAAACTTAGTGAAGCGAGTTCGAAGAATGGATTCGGAGGCATTTCTTCAGTGAAAAGTGTGCAGCAGAAAGTGGTAGGTTGGAACAAAAGTGGGGGAGGAAATTCCCTGCATAGAGTTGCTAGCTTGGAACATCTTCAGAAGCGGATTCGTGGTGATGAAGATTCACGTGGAGAGCAATAA 1101 0.4414 MERVLSVDEISEQYWVAAKKESCKSKSKMNRSESEWAFQQFLQEAVSPSSSSSSDVKPKKDPDINMNIPVTLNVDSHDYQTILKTKLNLACAAVALTRGSLVKSQNPTTFPDSGSQAAVPSEVGTLKDVEAATGISFSSPSLQKKPAVAVRPTLSASSREQSDDEEAEEEINMTGKMNTTDAKRVRRMLSNRESARRSRRRKQAHLSELETQVSQLRGENSSLLKRLTDVNHRYNSAAVDNRVLKADVETLRAKVKMAEETVKRISGLNPMFHAMTEMSSMEIAMFDESRSETSGGGAVPVQEDTNHKLSEASSKNGFGGISSVKSVQQKVVGWNKSGGGNSLHRVASLEHLQKRIRGDEDSRGEQ 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium112g00003 366 SUPERFAMILY Leucine zipper domain 183 233 IPR046347 GO:0003700|GO:0006355
Vium112g00003 366 MobiDBLite consensus disorder prediction 139 206 - -
Vium112g00003 366 Pfam Basic leucine-zipper C terminal 250 359 IPR020983 -
Vium112g00003 366 FunFam BZIP transcription factor 181 232 - -
Vium112g00003 366 Gene3D - 182 236 - -
Vium112g00003 366 Pfam bZIP transcription factor 182 233 IPR004827 GO:0003700|GO:0006355
Vium112g00003 366 MobiDBLite consensus disorder prediction 348 366 - -
Vium112g00003 366 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 181 231 IPR004827 GO:0003700|GO:0006355
Vium112g00003 366 SMART brlzneu 179 243 IPR004827 GO:0003700|GO:0006355
Vium112g00003 366 MobiDBLite consensus disorder prediction 333 366 - -
Vium112g00003 366 CDD bZIP_plant_GBF1 184 235 IPR045314 GO:0003700|GO:0006355
Vium112g00003 366 PANTHER BASIC LEUCINE ZIPPER 63 1 360 - -
Vium112g00003 366 Coils Coil 241 261 - -
Vium112g00003 366 Coils Coil 192 226 - -
Vium112g00003 366 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 186 201 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium112g00003 Vium-Chr112 17097 19435 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium112g00003 1 272 bZIP Transcription Factor Family AT4G02640 41.158 3.57e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium112g00003 bZIP_C 2.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium112g00003 K25784 - gmx:778137 430.254