Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium112g00002 ATGGAAAGGGTGTTGTCAGTGGATGAAATATCGGAGCAATATTGGGTGGCGGCGAAGAAGGAATCATGCAAGTCAAAGTCAAAGATGAACCGTAGTGAATCGGAATGGGCCTTTCAGCAGTTTCTTCAGGAAGCAGTTTCTCCTTCTTCATCTTCTTCCTCCGACGTTAAACCCAAAAAGGATCCCGACATCAACATGAACATCCCTGTAACTCTAAATGTCGATTCCCACGATTACCAAACCATTCTTAAAACCAAGCTTAACCTCGCTTGTGCTGCTGTCGCTTTGACTCGGGGATCTTTGGTCAAATCTCAAAATCCGACCACTTTCCCTGACAGTGGATCACAGGCAGCTGTTCCTTCTGAAGTTGGAACCTTGAAAGATGTGGAAGCAGCAACTGGGATTTCATTCTCATCACCTTCCCTGCAAAAGAAACCTGCTGTTGCAGTGAGGCCAACATTAAGTGCATCATCAAGAGAGCAATCAGATGATGAGGAAGCGGAGGAAGAGATTAACATGACTGGAAAAATGAATACAACTGATGCAAAACGAGTAAGGAGGGAGTCTGCCAGACGCTCAAGGAGAAGAAAGCAGGCTCATTTAAGTGAGCTGGAGACACAGGTCTCCCAATTAAGAGGTGAAAATTCTTCCTTGTTAAAGCGCTTAACTGACGTGAACCACAGATACAACAGTGCTGCAGTTGACAACAGAGTATTGAAAGCTGATGTTGAAACGTTAAGAGCTAAGGTGAAGATGGCTGAAGAGACAGTGAAAAGAATTTCTGGGTTGAATCCAATGTTTCATGCAATGACTGAGATGTCATCAATGGAAATAGCAATGTTTGATGAAAGTCGTTCTGAGACATCAGGTGGTGGTGCTGTTCCTGTGCAAGAAGACACAAATCATAAACTTAGTGAAGCGAGTTCGAAGAATGGATTCGGAGGCATTTCTTCAGTGAAAAGTGTGCAGCAGAAAGTGGTAGGTTGGAACAAAAGTGGGGGAGGAAATTCCCTGCATAGAGTTGCTAGCTTGGAACATCTTCAGAAGCGGATTCGTGGTGATGAAGATTCACGTGGAGAGCAATAA 1086 0.442 MERVLSVDEISEQYWVAAKKESCKSKSKMNRSESEWAFQQFLQEAVSPSSSSSSDVKPKKDPDINMNIPVTLNVDSHDYQTILKTKLNLACAAVALTRGSLVKSQNPTTFPDSGSQAAVPSEVGTLKDVEAATGISFSSPSLQKKPAVAVRPTLSASSREQSDDEEAEEEINMTGKMNTTDAKRVRRESARRSRRRKQAHLSELETQVSQLRGENSSLLKRLTDVNHRYNSAAVDNRVLKADVETLRAKVKMAEETVKRISGLNPMFHAMTEMSSMEIAMFDESRSETSGGGAVPVQEDTNHKLSEASSKNGFGGISSVKSVQQKVVGWNKSGGGNSLHRVASLEHLQKRIRGDEDSRGEQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium112g00002 361 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 226 IPR004827 GO:0003700|GO:0006355
Vium112g00002 361 Gene3D - 184 231 - -
Vium112g00002 361 Pfam Basic leucine-zipper C terminal 245 354 IPR020983 -
Vium112g00002 361 Coils Coil 236 256 - -
Vium112g00002 361 Coils Coil 187 221 - -
Vium112g00002 361 Pfam bZIP transcription factor 187 228 IPR004827 GO:0003700|GO:0006355
Vium112g00002 361 SMART brlzneu 179 238 IPR004827 GO:0003700|GO:0006355
Vium112g00002 361 SUPERFAMILY Leucine zipper domain 187 228 IPR046347 GO:0003700|GO:0006355
Vium112g00002 361 PANTHER BASIC LEUCINE ZIPPER 63 1 355 - -
Vium112g00002 361 CDD bZIP_plant_GBF1 193 230 IPR045314 GO:0003700|GO:0006355
Vium112g00002 361 MobiDBLite consensus disorder prediction 139 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium112g00002 Vium-Chr112 17096 19436 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium112g00002 1 267 bZIP Transcription Factor Family AT4G02640 39.550 1.56e-46 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium112g00002 bZIP_C 2.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium112g00002 K25784 - gmx:778137 412.92