Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1129g00003 ATGGGTGAACGATGTCATTCAGATGCTCCGTTAGATACTATTTCCAGTGGGAGTGAGGAACACTTGATCTCTCATTTACCAAAAGAATGTAAGATTGGATCCATTAGTTTGGATGAAAATGATGATGATTATCCTGTGCCACGACCTGGAATGATCTTTAGGTCAGAAGCTGAGGCAAGATTGTATTACACAAAATATGCCGACCAAATGGGCTTCAGCGTCAAGACTAGAACCTCAAAAAGGGGAGGTGAAGGCCAAGTTAAATATTTGATACTTGTATGTTCCGAGAGATCAAGAACTGGTATTGATGAATCAAAGAAACAGTATTGTACTGCTAGGATAAATTTGACTTTACGTAAAGATGGAACCTATCAAATTAGTGCAGTTACTCTCGGTCATAATCATGAATTGGGTTCTCAGAGAATTACTATTGAGATGAAGTGTATAAGGAAATTGGATCCAGAAGTTATTGACATGGGTGTTAAGAAGATATCAGAGCAAAATAATTGCGGAAATTACCTTCAGACAGAAAGACAGTGGATTAGAGAAAATGGAGATGGTGATGCTCTTCAGAAGTATTTGGTGAGGATGCAAGAACAAGATAGAAACTTCTTCTTTGCAATTGACTTGGATGATTTGTTCAGCGCGAAGAATGTATTTTGGTCTGATGGAAGGAGTAGAGCTGCATATGAATCTTTTGGTGATGTGGTGACAGTTGATACGACATGCCTTTCCAATCACTACAAAGTGCCACTTGTAACTTTCATTGGAGTTAACCATCATGGGCAATCTGTACTGTTTGGTTGTGGGTTGTTATCATCTGACGACTCAGAGTCATTTGCTTGGTTGTTCGAATCATTGTTGCATTGCATGTCTGGTGTACCCCCACAAGGAATCGTAACAGATCATTGCTGCAGGGCCATGCAGAAAGCAGTTGAAACTGTATACCCCTCCATTCGACATCGATGGTGTTTGTCAAATATAATGGAAAAGCTTCCCCAACTAATCCATGAGTATGCTAATTGCAAGTCCTTAAGAGATCGTATGCATAATGTTGTCTATGAGACACCAACAACAGATGAATTTGAGGGAAAATGGAAGAAGATTTTGGAGGATTTTGACCTCAAAGACAATAAATGGTTGAAGGAATTGTTCCTTGACCGACATCGCTGGGCTCCTTCCTTTGTAAGAGGTGGTTTTTGGGCTGGAATGTATACTAATCCGCAAAGTGAAAGTAGGCATGAAATTTTTGATGGATTTATAAACCAACAAACAACTTTGAAGCAATTTGTTGATCAGTACAATAATGCCTTGCAGTATAAGGCTGAGAAGGAGTATATAGCTGACATACATTCATCCAGTAATAGTCAGACTTGTGTTACCAAATCTCCAATTGAGAGGCAGTTTCAATCTGCTTACACTCATGCAAAGTTTCTGGAGGTTCAACGTGAATTTGTTGGAAAGGCTGATTGTAACGTTTTTGTTGCTTGTGAAGATGGTTCTATTTGTCGCTACAATGTGATAGAGGATATGATAACAGAGGATAAGCCTAAGGAATCCGTGGTTGAAGTCATATATAACAGGGAAGATTGTGATATAAAATGCAACTGTGGCTTGTTTGAGTTTAGAGGTATACTTTGTAGGCACTCGCTTGCAGTACTATCACAAGAGAGAGTGAAGGAGGTCCCGTGTAAATATATTTTAGACAGATGGAAAAAAAATATTGTGAGGAAGCATGTTTGTATAAAAACCAGCTATGGTGTTGTGCATTTTGAACCTCAAGTGCAGAGGTTTGATCTGTTATGCAAACAATTCAATAGTATTGCTGCTGCTGCTGCTGAATTTGAGGGTACAAGTTCTTTTGTAAAGGATACCCTATGTAACTTGAAGGAGAAACTTGACTCATGGACATCGTTACCGATAAACTCTTCTCTTGTGGATGTAGAGAAACACAACAATATGATACATTGA 1971 0.3886 MGERCHSDAPLDTISSGSEEHLISHLPKECKIGSISLDENDDDYPVPRPGMIFRSEAEARLYYTKYADQMGFSVKTRTSKRGGEGQVKYLILVCSERSRTGIDESKKQYCTARINLTLRKDGTYQISAVTLGHNHELGSQRITIEMKCIRKLDPEVIDMGVKKISEQNNCGNYLQTERQWIRENGDGDALQKYLVRMQEQDRNFFFAIDLDDLFSAKNVFWSDGRSRAAYESFGDVVTVDTTCLSNHYKVPLVTFIGVNHHGQSVLFGCGLLSSDDSESFAWLFESLLHCMSGVPPQGIVTDHCCRAMQKAVETVYPSIRHRWCLSNIMEKLPQLIHEYANCKSLRDRMHNVVYETPTTDEFEGKWKKILEDFDLKDNKWLKELFLDRHRWAPSFVRGGFWAGMYTNPQSESRHEIFDGFINQQTTLKQFVDQYNNALQYKAEKEYIADIHSSSNSQTCVTKSPIERQFQSAYTHAKFLEVQREFVGKADCNVFVACEDGSICRYNVIEDMITEDKPKESVVEVIYNREDCDIKCNCGLFEFRGILCRHSLAVLSQERVKEVPCKYILDRWKKNIVRKHVCIKTSYGVVHFEPQVQRFDLLCKQFNSIAAAAAEFEGTSSFVKDTLCNLKEKLDSWTSLPINSSLVDVEKHNNMIH 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1129g00003 656 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 36 634 IPR031052 GO:0006355
Vium1129g00003 656 Pfam MULE transposase domain 236 330 IPR018289 -
Vium1129g00003 656 Pfam FAR1 DNA-binding domain 62 137 IPR004330 -
Vium1129g00003 656 ProSiteProfiles Zinc finger SWIM-type profile. 520 558 IPR007527 GO:0008270
Vium1129g00003 656 SMART 26again6 533 560 IPR006564 GO:0008270
Vium1129g00003 656 Pfam SWIM zinc finger 531 555 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1129g00003 Vium-Chr1129 25579 28374 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium1129g00003 MULE 1e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1129g00003 - K17604 gmx:102660547 1049.27