Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11295g00006 ATGGAGTCACCACCCAGTAATCACCACACCGTCGACGGCGATGCCAACGACGTTAGAGCCTTCTCCCACCGCGACGACGAAGACGACAAGCCCCAACCTCTCACCGGCGACGGTGCCAGTCCCGGAAAGATTTTTATTGGCGGTTTAGCGAGAGAAACCACTATTGCTCAATTCATCAAGCACTTTGGTAAATACGGTGAGATAACGGATTCCGTTATCATGAAGGACCGGAAGACCGGCCAGCCTCGCGGCTTCGGCTTCATAACTTACGCTGATCCCTCTGTGGTTGATAGAGTTATTGAGGACACTCACATTATCAACGGCAAGCAGGTGGAGATTAAGAGGACGATTCCGAGGGGTGCAGTTGGCTCGAACTCTAAGGACTTCCGAACCAAGAAGATTTTTGTTGGTGGAATTCCTTCTACTGTGAGTGAAGGTAGTGTTTCAGTTGAGCCAATTTTCCTCTTGCTGATGTTGCTGATGCCTTACTTAATGTCAAAATTTAAGGATGTAGCATGA 519 0.4894 MESPPSNHHTVDGDANDVRAFSHRDDEDDKPQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDRVIEDTHIINGKQVEIKRTIPRGAVGSNSKDFRTKKIFVGGIPSTVSEGSVSVEPIFLLLMLLMPYLMSKFKDVA 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11295g00006 172 MobiDBLite consensus disorder prediction 1 42 - -
Vium11295g00006 172 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 111 IPR000504 GO:0003723
Vium11295g00006 172 SUPERFAMILY RNA-binding domain, RBD 42 146 IPR035979 GO:0003676
Vium11295g00006 172 Gene3D - 42 121 IPR012677 -
Vium11295g00006 172 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Vium11295g00006 172 FunFam Heterogeneous nuclear ribonucleoprotein 1 41 123 - -
Vium11295g00006 172 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 24 145 - -
Vium11295g00006 172 MobiDBLite consensus disorder prediction 12 33 - -
Vium11295g00006 172 SMART rrm1_1 43 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11295g00006 Vium-Chr11295 50622 51606 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11295g00006 16 107 Eukaryotic Initiation Factors Gene Family AT1G71770 31.183 1.04e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11295g00006 K12741 - vum:124820525 344.354