Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11295g00002 ATGGGTTCACCTGTTAATGGATTGGATTCTTTAGCAGAAGTTCAGAATTCAGTTTCTGTGGCAGATCATGATCCTCCTTCAACATCAGGGATTCCCCGGCCATCTCGGCCGCCGTTAAGCACATCCAGAAATCATGGGGCTTCATCCAGTCAGCATAATAACTATGGAATGAAGACCATCCACCACCAAAAGCATTCATATCAGGAGGCTGACAGCGTAGAGCGAGATGAAATGCAGAATATGGAGAAGCAGCACTATAACACAAATGGGAAATCTGAGTATGTGAGCCTCAATAAAGCTGTTGAAAGTTGTTTAGGAAAGAATATCTCCAAAATGGAAACTAAATTAAGTATCAAGCAACAGTTAAATGCTTCCAAGAATTGTGATTCGTCAAAAGGTGTTGTTGATGGAACAAAGAGCAACTGCCAATCAGAGATTACCTTTTGTCCAAGTCCTCAGAATAGTTTCTATTCAGAAGCCAAGGAAAGTTTTGGCAACACTGGAGTCAGTGAATGTGTTAGTGTTGATAAGTCAGTTGAAAGTGGAGAAGTTACTAATTCCTGTGAATTTAACGAGAGCAGGAAGACCAGCATCTGTAGAGGAAGCACTGGAAGCGACGTTAGTGATGAGAGCAGCACTAGTAGTCTGAGCAGTGCTTTATACAAGCCCCACAAGGCAAATGACATAAGATGGGAAGCAATTCAAGCCATTCGAGCCCGTGATGGGGTGTTGGAAATGAGACATTTCAGGTTATTGAAGAAATTGGGATGTGGAGACATAGGAAGTGTATATCTAGCTGAACTAAGTGGCACTAGGACTTGTTTTGCAATGAAAGTAATGAACAAAACTGAGTTGGCAAGTCGCAAGAAGCTTGTTAGGTCTCAGACAGAGAGAGAGATACTGCAGTCTCTAGATCATCCATTTCTACCCACATTGTATACACACTTTGAGACAGAGACATTCTCCTGCTTGGTAATGGAGTTTTGCCCTGGAGGGGACTTGCATGCACTCAGGCAAAGACAACCTGGGAAGTATTTTTCTGAGATTGCTGCCAGGTTAGCCATTTCATTTTTCCTTGCTTGCCCCATCAGTTCTATCGACATACAACATGCAGAGGCATTAGATAACTGTATTTTCCTTCCTTGGAGTCATGGAATCAAGTGTTCTATCTGTAGGGCCAGAATAGAAACTGTATCATTTTAG 1203 0.4231 MGSPVNGLDSLAEVQNSVSVADHDPPSTSGIPRPSRPPLSTSRNHGASSSQHNNYGMKTIHHQKHSYQEADSVERDEMQNMEKQHYNTNGKSEYVSLNKAVESCLGKNISKMETKLSIKQQLNASKNCDSSKGVVDGTKSNCQSEITFCPSPQNSFYSEAKESFGNTGVSECVSVDKSVESGEVTNSCEFNESRKTSICRGSTGSDVSDESSTSSLSSALYKPHKANDIRWEAIQAIRARDGVLEMRHFRLLKKLGCGDIGSVYLAELSGTRTCFAMKVMNKTELASRKKLVRSQTEREILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQRQPGKYFSEIAARLAISFFLACPISSIDIQHAEALDNCIFLPWSHGIKCSICRARIETVSF 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11295g00002 400 Gene3D Phosphorylase Kinase; domain 1 243 358 - -
Vium11295g00002 400 MobiDBLite consensus disorder prediction 1 54 - -
Vium11295g00002 400 FunFam Serine/threonine-protein kinase D6PK-like 247 332 - -
Vium11295g00002 400 PANTHER FLIPPASE KINASE 1-RELATED 65 359 - -
Vium11295g00002 400 SMART serkin_6 249 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11295g00002 400 ProSiteProfiles Protein kinase domain profile. 249 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11295g00002 400 SUPERFAMILY Protein kinase-like (PK-like) 226 352 IPR011009 -
Vium11295g00002 400 MobiDBLite consensus disorder prediction 9 24 - -
Vium11295g00002 400 Pfam Protein kinase domain 250 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11295g00002 400 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11295g00002 Vium-Chr11295 37 2735 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11295g00002 174 370 AGC Kinase Gene Family AT5G47750 70.051 9.87e-87 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium11295g00002 Pkinase 1.7e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11295g00002 K08286 - gmx:100812077 569.311