Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1127g00004 ATGGCTCTGGGAAGAGGCAGTGCAGTAGTGCTATCACTCTCTCTCTGTTTCTTCCTGCTTCACTCTCACATGGCTCATGCTGCCACCTACACAGTCGGTGGTAACGGTTGGACCTTCAACACTGTTGGCTGGCCCAATGGCAAACGCTTTAGGGCTGGTGACACACTTGTGTTCAAATATGCCCCCGGAGCTCATAATGTGGTGGCGGTAAACAGGGCTGGGTATAGTGCTTGCTCGACTCCAAGAGGGTCGAAAGTGTATCGTTCAGGGAATGATCAGATCAGACTTGCTAAGGGACAGAACTTCTTCATCTGCAACTTTGTGGGTCACTGTGAATCTGGGATGAAAATTGCCGTCAATGCTGTTTGA 369 0.5014 MALGRGSAVVLSLSLCFFLLHSHMAHAATYTVGGNGWTFNTVGWPNGKRFRAGDTLVFKYAPGAHNVVAVNRAGYSACSTPRGSKVYRSGNDQIRLAKGQNFFICNFVGHCESGMKIAVNAV 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1127g00004 122 Pfam Plastocyanin-like domain 37 115 IPR003245 GO:0009055
Vium1127g00004 122 SUPERFAMILY Cupredoxins 28 121 IPR008972 -
Vium1127g00004 122 CDD Plantacyanin 28 121 IPR041844 -
Vium1127g00004 122 Gene3D - 32 121 IPR008972 -
Vium1127g00004 122 ProSiteProfiles Phytocyanin domain profile. 28 122 IPR003245 GO:0009055
Vium1127g00004 122 PANTHER BLUE COPPER PROTEIN 26 120 IPR039391 GO:0009055
Vium1127g00004 122 FunFam basic blue protein-like 28 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1127g00004 Vium-Chr1127 71112 71956 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1127g00004 8 122 Phytocyanin Superfamily AT1G17800 38.843 2.57e-21 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1127g00004 - - gmx:100499869 192.586