Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11264g00008 ATGAGAAGTAAGAGTGTAGGGAAACGTAGGGATGCGGCATGCGCAACTGCTCCTTCACTCTTCGCCATTCCTCTCATTTTGGATGAACATAACGTAACTGCGTTTGATAGTGAGAGTGACGATGTCAATTGCGTTCATCGCCGTCCCGAACCTGGACCCGAGTTTGTGGAGTGCTTGGACAGGAGCATCTGCGTATTCTGTGACGATAAAGCCGAAGAGGGAATTTTGGTTTGCAGCGAAAGGCTGTGCCCTGTCACAGTACATTCCAACTGTATCGGTTCCGAACCCAAATTCGATTATTTGGGTCACTTCTACTGCCCCTACTGCTGGTACAAGCGCGCCCTGGACACGTGCCGGCAACTGAGAGAGAAATCCCTGGTCGCCAAGAAAGCTTTGTCACACTTCTTGGAGAGTGGCGCACGTGCAGATTCTGCTGTTGCACGGGCGGGCCTGGTTCAGGATGGGATACAATGTGTGGAGGAAACACAATCTGAAGAGAATAATAATACAGATGAAGAAAAGGTGTCGGTGTCTGTGACGGTTAGTTCTGTGAGTGAGACCAACGATGAAGAGCCTAATGTCGTTTTAGCAAAGACAAGGAAGGACCAGAGGAAGGGTCCTTCTGCAAGGAGGAGGCGTTTGTTACAACAAGAAGAGTATAAACATTCTAACACCAGAAGGAAGATTGCTGGTAATGTAACAGAGGAGGAAGTTACCAGCTTCCAAACTTTGAGGCGACCACAGAAGTCGATCGTGAAAGGAATGAATCGGACTTCACTGACTGCAAGGCGCAAGAGATTACTTTGGACCCTTGAAGAAGAAAAGGTTCTGAAGGAAGGAGTATTGAAGTTCTCACTAGAAAATCAAAATATCCCTTGGAGGAAAATTTTGGAATTTGGTTCTCGTGTATTTGACAAGACTCGAACTCCTGTTGATCTCAAGGATAAATGGAAGAACATTATCTCCAAGGAAGGAATTTAG 981 0.4659 MRSKSVGKRRDAACATAPSLFAIPLILDEHNVTAFDSESDDVNCVHRRPEPGPEFVECLDRSICVFCDDKAEEGILVCSERLCPVTVHSNCIGSEPKFDYLGHFYCPYCWYKRALDTCRQLREKSLVAKKALSHFLESGARADSAVARAGLVQDGIQCVEETQSEENNNTDEEKVSVSVTVSSVSETNDEEPNVVLAKTRKDQRKGPSARRRRLLQQEEYKHSNTRRKIAGNVTEEEVTSFQTLRRPQKSIVKGMNRTSLTARRKRLLWTLEEEKVLKEGVLKFSLENQNIPWRKILEFGSRVFDKTRTPVDLKDKWKNIISKEGI 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11264g00008 326 ProSiteProfiles Myb-like domain profile. 261 321 IPR001005 -
Vium11264g00008 326 SUPERFAMILY Homeodomain-like 263 321 IPR009057 -
Vium11264g00008 326 Pfam Myb-like DNA-binding domain 269 320 IPR001005 -
Vium11264g00008 326 Gene3D - 258 322 - -
Vium11264g00008 326 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 28 324 - -
Vium11264g00008 326 SMART PHD_3 63 110 IPR001965 -
Vium11264g00008 326 CDD SANT_TRF 269 321 - -
Vium11264g00008 326 SUPERFAMILY FYVE/PHD zinc finger 53 112 IPR011011 -
Vium11264g00008 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 145 IPR013083 -
Vium11264g00008 326 SMART sant 265 323 IPR001005 -
Vium11264g00008 326 CDD PHD_SF 63 109 - -
Vium11264g00008 326 ProSitePatterns Zinc finger PHD-type signature. 64 109 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11264g00008 Vium-Chr11264 61121 71053 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11264g00008 266 320 Single Myb Histone (SMH) Gene Family AT3G49850 49.123 8.63e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11264g00008 - - vun:114169284 550.436