Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11263g00002 ATGCTTGGACAAGGGAATTGTCTCCTTAGATCACCATTCTTGCTATGTATACTCATTGGCCTCTTGATGCATTCTGTTGTGGGTGCTGAGATTCCCTTGGGTTCTAAACTTTCTGTGGTTGACAATGATTATTGGGTTTCCTCCAATGGTGATTTTGCAATTGGATTCTTCAACATTTCAGATCAACCCAACCAGTTTAGTGTTGGAATTAGATTCAATTCCAAGTCTATACCTTATAGTCGACAAACTGTGGTTTGGGTTGCTGGGGGTGATGTCACAGTTGGTAACGAGTCCTACTTTGAACTCACTCATGAAGGGGAACTGGTCCTGTTTGATTCCTTGCATGAAGCTTTTGCTTGGACCCCTGGAACGGGTAAACGATCTGTTGCATCAGCTTCACTCCTTGACAATGGAAATCTTGTTCTAATGGACAAAGAGCAACACATCATTTGGGAAAGTTTTAGGACTCCATCTGATACTCTTCTCCCAGGACAAAATTTATTCGCTAATGAAAAGCTTCGTGCAGCATCTGCAATCAAGAATAGCAAGTCTAGTTACTATAGTCTTCACATGAATGCTTCTGGGCATTTGGAGCTACATTGGGAAAGTGATGTTATCTACTGGACAAGTGAAAACCCTTCTTCTGCTTCGAATCTCAGTGCTTTCCTTACAACAAATGGAGCTCTAGAACTTCGAGACCGAAGGTCAAAAGCTGTTTGGTCTGCATTTGGACAGGATCACAATGATTCGGTGAATTATAGATATCTTCGGCTGGATGTGGATGGAAATCTTCGCCTATATTCGTGGGTTGAAAGTTTGGGATTGTGGAGATCGGTCTGGCAAGCTGTTGAGAATCAGTGCAAGGTCTTTGCAACTTGTGGTGAACTTGGTGTCTGTGTCTTCAATGCCTCAGGTTCTGCTGAATGCAAATGCCCGTTTCAGGTATCTGCGGGTAACAAATGTTTGGTTCCATTTGAACGAGATTGTGCATCTGGTACCAATATGATAGCATACAAGAACACATATTTATATGCATTCTACCCTCCTGATAATTCTGTTATCACAAGTAATTTGCAGCATTGTGAACAGTTGTGTCTGAATGATCCACACTGTACAGCTGCAACATTTTCCAATGACAGAACTCCGCTATGTTCAATAAAGAAAACTGGGTACGTCACTGGCTATTCAGATCCATCTGTAAGCTCAATATCATTTGCCAAGAGATGTTCAGGTCCAATTGCTGTAAACCCAAGTTTCACAAAATCTCCTCCATCTGAACCACCTCCTCCTCTCTGTGTTCCTTGCCTAATGGGGGCTGCCACAGGCACATTTTTCATCATTGTTATTCTCCAGTTGGGAATTATGTTCATCTACAGAAGAAAAAACTCTACCAGGCAAAAGGCCACTTTAGGTTTCATTGGCACAAACTCAAAGGGTTTAATCGTGTTGTCCTTCTCAGAAATCAAGACCCTCACAGGGGACTTCAAGAATCAAATTGGGCCAAAGGTGTTCAAGGGTTTGCTACCGAACAACCTCCCGATTGCACTCAAAGACCTGAACGCAACCTTGGAAGAAAGGAAGTTTCGGAGTGCTGTTATGAAGATGGGTTGCATCCACCACAAGAACCTTGTGAAACTGGAGGGTTATTGTTGTGAGTTTGATCACAGGTTTTTGGTGTATGAATATTGCAAAAAGGGTTCACTGGACAAGTACATAGATGATCCTGCACTATGCAAGATGCTAACATGGAGAAAGAGAGTTGAGATATGCTCAAGTATGGCAAAAGCCATATGTTATTTGCACTCCGGGTGCAGGGAGTTCATCAGCCATGGAAATTTGAAATGTGAAAACGTTATGTTGGATGAAAACTTGGTGGCGAAGGTGAGTGAATTTGGGTTTGCTATTGCAGATGGGAAGGCAACATATTGTGGCTTTTCAGCTGAGAAGGATGTAGAGGATTTTGGCAAGGTAGTTTTAGCCTTGCTAACCGGGTGCCGTGATCATGAACATGTTGAACTTTGTGGGTGGGCGTATAAAGAATGGATGGAAGAGAGGGTGGTGAATGTGATTGATAGAAGAATGGAAGGAGGTTATAATTCAGAGGAACTGGAGCGTGTGTTGAGAATTGCATTTTGGTGCCTTCAAATGGATGAACGTAGAAGACCTTCCATGGGGGAGGTAGTAAGAGTTATTGATGGAACATTGAGTGTTGATCCTCCACCACCTCCTTTTGCGTTTCAGAGGCCATTGCAGGTAGATGATTCAGAAGAAAATGTTTCAGAGTTTGAAGTGTAG 2295 0.4266 MLGQGNCLLRSPFLLCILIGLLMHSVVGAEIPLGSKLSVVDNDYWVSSNGDFAIGFFNISDQPNQFSVGIRFNSKSIPYSRQTVVWVAGGDVTVGNESYFELTHEGELVLFDSLHEAFAWTPGTGKRSVASASLLDNGNLVLMDKEQHIIWESFRTPSDTLLPGQNLFANEKLRAASAIKNSKSSYYSLHMNASGHLELHWESDVIYWTSENPSSASNLSAFLTTNGALELRDRRSKAVWSAFGQDHNDSVNYRYLRLDVDGNLRLYSWVESLGLWRSVWQAVENQCKVFATCGELGVCVFNASGSAECKCPFQVSAGNKCLVPFERDCASGTNMIAYKNTYLYAFYPPDNSVITSNLQHCEQLCLNDPHCTAATFSNDRTPLCSIKKTGYVTGYSDPSVSSISFAKRCSGPIAVNPSFTKSPPSEPPPPLCVPCLMGAATGTFFIIVILQLGIMFIYRRKNSTRQKATLGFIGTNSKGLIVLSFSEIKTLTGDFKNQIGPKVFKGLLPNNLPIALKDLNATLEERKFRSAVMKMGCIHHKNLVKLEGYCCEFDHRFLVYEYCKKGSLDKYIDDPALCKMLTWRKRVEICSSMAKAICYLHSGCREFISHGNLKCENVMLDENLVAKVSEFGFAIADGKATYCGFSAEKDVEDFGKVVLALLTGCRDHEHVELCGWAYKEWMEERVVNVIDRRMEGGYNSEELERVLRIAFWCLQMDERRRPSMGEVVRVIDGTLSVDPPPPPFAFQRPLQVDDSEENVSEFEV 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11263g00002 764 ProSiteProfiles Protein kinase domain profile. 467 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11263g00002 764 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 563 641 - -
Vium11263g00002 764 SMART blect_4 36 157 IPR001480 -
Vium11263g00002 764 Gene3D Transferase(Phosphotransferase) domain 1 640 739 - -
Vium11263g00002 764 Gene3D Transferase(Phosphotransferase) domain 1 563 639 - -
Vium11263g00002 764 Gene3D - 156 273 IPR036426 -
Vium11263g00002 764 ProSiteProfiles Bulb-type lectin domain profile. 30 155 IPR001480 -
Vium11263g00002 764 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 459 562 - -
Vium11263g00002 764 PANTHER OS07G0415500 PROTEIN 12 745 - -
Vium11263g00002 764 ProSiteProfiles Bulb-type lectin domain profile. 158 279 IPR001480 -
Vium11263g00002 764 Gene3D - 27 155 IPR036426 -
Vium11263g00002 764 Pfam PAN domain 338 409 IPR003609 -
Vium11263g00002 764 Pfam D-mannose binding lectin 83 176 IPR001480 -
Vium11263g00002 764 PIRSF SRK 5 639 IPR024171 GO:0004674
Vium11263g00002 764 PIRSF SRK 639 763 IPR024171 GO:0004674
Vium11263g00002 764 SUPERFAMILY alpha-D-mannose-specific plant lectins 184 278 IPR036426 -
Vium11263g00002 764 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 156 - -
Vium11263g00002 764 SMART ntp_6 330 408 IPR003609 -
Vium11263g00002 764 Pfam S-locus glycoprotein domain 233 311 IPR000858 GO:0048544
Vium11263g00002 764 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 211 IPR036426 -
Vium11263g00002 764 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 642 739 - -
Vium11263g00002 764 SUPERFAMILY Protein kinase-like (PK-like) 480 729 IPR011009 -
Vium11263g00002 764 Gene3D Hepatocyte Growth Factor 328 411 - -
Vium11263g00002 764 Pfam Protein tyrosine and serine/threonine kinase 503 637 IPR001245 GO:0004672|GO:0006468
Vium11263g00002 764 CDD B_lectin 46 157 IPR001480 -
Vium11263g00002 764 Gene3D Phosphorylase Kinase; domain 1 457 562 - -
Vium11263g00002 764 ProSiteProfiles PAN/Apple domain profile. 329 409 IPR003609 -
Vium11263g00002 764 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 157 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11263g00002 Vium-Chr11263 11692 14857 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11263g00002 446 760 Receptor kinase-like Gene Family AT4G21230 31.742 1.65e-40 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium11263g00002 PK_Tyr_Ser-Thr 1.1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11263g00002 - - vun:114192568 1411.36