Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11250g00001 ATGGCTTTCTTCCAAATTCTAACCGTTGTTGCATTCATTCTTGTAGCCAAACCTAGCACGAGTTCATCAGCTTGTGAAAATTCTACCATCTCCACCAACTTCAGCCAAACCAAGATCAATTATAGAGAAACAAGCAATCCATCAAAAACTTCCACAGAAAGCTTCAAAAACTACATCAAAACCTCTTGCAACTCAACCACATATCCATCAATATGCTACAGCAGTTTATCCCCATATGCTGCAAAAATTGAAGCAGATCCTACGAAGCTGTGCATTGTGTCTCTCTCCCTGGCATATAAGGCAGCAAAAAGTGCATCCTCCACCATATCAAAGATTCTGAAGAAAAACAACATGACAGGGATTGCCGAACAAGTGGTGCAAGATTGCTTTGTCAATGTGAAGGACTCCATTGGTGAGCTCAAAGATTCCCTTGATTCCTTGTTCCATTTGGATGGTGCTGACAGAAAGTTTCAGATCAACAACATAAAGACATGGGTGAGTGCTTCCATCACCGATGACCAAACTTGCTCAGATGGCTTTGATGAGATGAATGTGGATTCAACTTTCACAGAAAAAATCAGAAACCTTGTTTTGGATGTGGCAAGGAAGACCAGCAATGCTTTGTATTTCATCAACAACAATTTGTACTGA 651 0.4055 MAFFQILTVVAFILVAKPSTSSSACENSTISTNFSQTKINYRETSNPSKTSTESFKNYIKTSCNSTTYPSICYSSLSPYAAKIEADPTKLCIVSLSLAYKAAKSASSTISKILKKNNMTGIAEQVVQDCFVNVKDSIGELKDSLDSLFHLDGADRKFQINNIKTWVSASITDDQTCSDGFDEMNVDSTFTEKIRNLVLDVARKTSNALYFINNNLY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11250g00001 216 CDD PMEI-like_3 61 213 - -
Vium11250g00001 216 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 214 IPR035513 -
Vium11250g00001 216 SMART PMEI_2 54 210 IPR006501 GO:0004857
Vium11250g00001 216 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 213 IPR035513 -
Vium11250g00001 216 Pfam Plant invertase/pectin methylesterase inhibitor 58 208 IPR006501 GO:0004857
Vium11250g00001 216 NCBIfam pectinesterase inhibitor domain 50 213 IPR006501 GO:0004857
Vium11250g00001 216 PANTHER PECTINESTERASE INHIBITOR-LIKE 12 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11250g00001 Vium-Chr11250 4642 5483 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11250g00001 45 213 Carbohydrate Esterase AT3G14310 27.746 1.26e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11250g00001 - - gmx:100527443 299.671