Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11241g00001 ATGTCCTCCTCATCCACTTCCTTTTCACCGGACCAACACCTCTCTCCCTCCGACCAGCTCTGCTATGTCCATTGCAACTTCTGTGACACTGTCCTAGCGGTGAGTGTTCCTTGCTCCAGTTTGTTTAAGACTGTCACTGTGAGATGTGGTCATTGCACCAACCTTCTCTCCGTCAACATGCGTGGCCTGCTTCTTCCTTCGGCTAATCAGCTCCACCTTGGCCACACCTTCTTCACTCCTCAAAATCTTCTGGAGGAGATTCGTAATGCACCTTCCGCAAACATGGTGATGAATCAGATGCCAAACCCTAATGATTTGGTCACCAGCACCATGCGAGGAGGACCTGAAGAAACTCCTAAGCCTCCATCGGCTAATAGACCTCCAGAGAAGAGACAGAGAGTTCCATCTGCTTACAACCGCTTCATCAAGGATGAGATCCAACGTATCAAAGCTGGGAACCCTGATATAAGTCACAGAGAGGCCTTTAGTGCAGCTGCAAAGAATTGGGCCCACTTTCCACACATTCATTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAATGTTCGTCAGGAAGCAGAGGATGTGCTTATCAAAGATGGTTTTTTCGCACCAGCTAATGTAGGTGTCTCTCCCTTCTAG 648 0.4861 MSSSSTSFSPDQHLSPSDQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLLPSANQLHLGHTFFTPQNLLEEIRNAPSANMVMNQMPNPNDLVTSTMRGGPEETPKPPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQEAEDVLIKDGFFAPANVGVSPF 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11241g00001 215 CDD HMG-box_SF 133 169 - -
Vium11241g00001 215 SUPERFAMILY HMG-box 120 173 IPR036910 -
Vium11241g00001 215 Gene3D High mobility group box domain 116 197 IPR036910 -
Vium11241g00001 215 Pfam YABBY protein 16 179 IPR006780 GO:0007275
Vium11241g00001 215 MobiDBLite consensus disorder prediction 104 135 - -
Vium11241g00001 215 FunFam Axial regulator YABBY 124 196 - -
Vium11241g00001 215 PANTHER PROTEIN YABBY 6-RELATED 1 191 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11241g00001 Vium-Chr11241 3594 6359 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11241g00001 27 213 C2C2-YABBY Transcription Factor Family AT4G00180 62.381 1.62e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vium11241g00001 YABBY 7.8e-74 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11241g00001 K25796 - gmx:100781267 434.876