Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1123g00001 ATGGCGGCAGGTGATGAAGAGTTGACCCTTCTGGGAGTTGTGGGAAGCCCATTTCTGCACAGGGTTCAGATCGCTCTCAAATTGAAGGGAATAGAATACAAATACGTGGAAGATGATTTGAACAACAAGAGTGATCTTCTCCTCAAGCATAACCCTGTTTACAAAATGATTCCTGTGCTCATTCACAACGACAAGCCAATATCAGAGTCCCTTGTGATTGTTGAATACATCGATGACACATGGAAACACAACCCCATCTTGCCTTCGGATCCTTACCAGAGAGCCTTGGCTCGTTTCTGGGCTAAGTTCATCGATGACAAGTGTGTGGCTCCAGCGTGGAAATCTGCCTTCATAGTTGATGAGAAAGAGAAAGAGAAGGCTGTAGAAGAGTTATTCGAGGCTCTTGGGTTTCTTGAGAATGAGCTGAAGGGGAAATTTTTTGGTGGGGATGAGATTGGGTTTGTGGATATTGCTGGAGTGTTCATACCTATTGTTCAAGAGATTGCAGGGTTGCAATTGTTCTCGAGTGAGAAATTTCCAAGGTTGTATAAATGGAGCCAAGACTTCCACAACCATCCGCTTGTGAACGAGGTTCTGCCTCCTAAAGACCAACTTTTTGCCTATTTCAAGGCTCGGGCTCAAAGCCTTGCTGCTAAAAGGAAAAATTAG 669 0.4454 MAAGDEELTLLGVVGSPFLHRVQIALKLKGIEYKYVEDDLNNKSDLLLKHNPVYKMIPVLIHNDKPISESLVIVEYIDDTWKHNPILPSDPYQRALARFWAKFIDDKCVAPAWKSAFIVDEKEKEKAVEELFEALGFLENELKGKFFGGDEIGFVDIAGVFIPIVQEIAGLQLFSSEKFPRLYKWSQDFHNHPLVNEVLPPKDQLFAYFKARAQSLAAKRKN 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1123g00001 222 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 6 85 IPR004045 -
Vium1123g00001 222 Coils Coil 121 141 - -
Vium1123g00001 222 CDD GST_C_Tau 91 212 IPR045074 GO:0004364|GO:0006749
Vium1123g00001 222 CDD GST_N_Tau 8 81 - -
Vium1123g00001 222 Pfam Glutathione S-transferase, C-terminal domain 119 193 IPR004046 -
Vium1123g00001 222 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 209 IPR010987 -
Vium1123g00001 222 SUPERFAMILY GST C-terminal domain-like 79 214 IPR036282 -
Vium1123g00001 222 FunFam Tau class glutathione S-transferase 1 89 - -
Vium1123g00001 222 Gene3D Glutaredoxin 1 89 - -
Vium1123g00001 222 SUPERFAMILY Thioredoxin-like 8 108 IPR036249 -
Vium1123g00001 222 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 11 205 IPR045073 -
Vium1123g00001 222 Gene3D - 90 220 - -
Vium1123g00001 222 FunFam Tau class glutathione S-transferase 87 219 - -
Vium1123g00001 222 SFLD Glutathione Transferase (cytosolic) 5 220 IPR040079 -
Vium1123g00001 222 Pfam Glutathione S-transferase, N-terminal domain 7 78 IPR004045 -
Vium1123g00001 222 SFLD Main.3: Omega- and Tau-like 5 220 IPR045073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1123g00001 Vium-Chr1123 14669 15839 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1123g00001 5 218 Glutathione S-transferase Gene Family AT3G09270 52.489 3.85e-73 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1123g00001 K00799 - gmx:548029 394.43