Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium111g00008 ATGCTAGAGCCTGGTGGTGCTGAACGTCATTCCGAGGCCAGTTCCGAGACTCTCAATCTCCTTCTTGGAAGCTCCATGAGCAGCAGAGCATTGCAGTACCAGTTTCACCGTCTTTCCTTCGATCTCCTCCCGCCCTCGCCGGAGAGTCTCTCCCTTAAGCCTCATCGCTCCTCCGACTTCGCCTACTCGGCCATTCGCTCTGCCGCCTTCTGCCGCAAGGCCGCCCTCACCTTCCGCGACTTCCACCTCCTCCGTCGCATCGGCTCCGGCGACATCGGTACCGTCTACCTCTGCCGCCTCCGAAACCGGCAATTCAACAGCCCCGTAGAGGACGAGGAGGATGAAGAGTGCTGTTTGTACGCGATGAAGGTGGTGGACAAAGACGCAGTGGCATTGAAGAAGAAGTCGCAGAGAGCGGAAATGGAGAGAAAAATCCTGAAGATGCTGGACCACCCGTTCCTTCCTACTCTCTACGCGGAGTTCGAAGCCTCTCATTTCTCTTGCATCGTGATGGAGTTTTGCTCCGGCGGAGACCTTCACTCGCTGCGCTTCAAGCACCCTCACAACCGTCTACCTCTCTCCTCCGCTAGATTTTATGCTGCGGAGGTGCTGGTGGCGTTGGAGTATTTACACATGCTGGGAATCATATACAGAGATTTAAAGCCCGAAAACGTGCTGGTGAGATCGGACGGTCACATCATGCTTTCTGATTTCGATCTCTCTCTTTGCTCGGATGCAATCCCAGCCGTTGAATCCTCAGATCCCTTAATACCTCACACTTACACTCACAGTTACACTCCCCCTCCCACTCGCTCGCATTCTTTTATCAGTCCATTCTCCTGCTTCTCGAACCGGGGTTTCCGGTCTCGTGACATGCGAGTCGTCGAACCGAACCGCCTCTTTGTAGCCGAACCGGTTTCGGCCCGCTCCTGCTCCTTCGTCGGAACCCACGAGTACGTCTCGCCAGAGGTTGCCTCCGGCAGGTCGCACGGTAACGCCGTTGACTGGTGGTCGTTTGGAGTATTTATCTACGAGCTTATATACGGTCGCACGCCGTACGCAGGTCCATCGAAGCAGGCTACGCTACGGAACATAGTGAAGAAGCCCCTGGCGTTCCCCACTGCCACGCCCGCGAGCTGTCTTGAACTCCACGCGCGAGATTTGATATCCGGCTTGCTGAACAAAGACCCGGCGCGTCGACTCGGGTCGAAGCGTGGCGCCGCTGACGTCAAGAAGCATCCCTTCTTCAAAGGGCTCAACCTGGCGCTGATTCGCATGCAGACGCCGCCCCTAGTGCCTAGCTCGAGAAGGTCCAAAACGACGTCGCTCTACCCCGCGAAGGGTAAAAGCAGCAGGAACCATCATAAACAGCATGAGACGGCGTCGTTTGAATTTTTCTTTTGA 1404 0.5598 MLEPGGAERHSEASSETLNLLLGSSMSSRALQYQFHRLSFDLLPPSPESLSLKPHRSSDFAYSAIRSAAFCRKAALTFRDFHLLRRIGSGDIGTVYLCRLRNRQFNSPVEDEEDEECCLYAMKVVDKDAVALKKKSQRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRFKHPHNRLPLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDAIPAVESSDPLIPHTYTHSYTPPPTRSHSFISPFSCFSNRGFRSRDMRVVEPNRLFVAEPVSARSCSFVGTHEYVSPEVASGRSHGNAVDWWSFGVFIYELIYGRTPYAGPSKQATLRNIVKKPLAFPTATPASCLELHARDLISGLLNKDPARRLGSKRGAADVKKHPFFKGLNLALIRMQTPPLVPSSRRSKTTSLYPAKGKSSRNHHKQHETASFEFFF 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium111g00008 467 MobiDBLite consensus disorder prediction 431 457 - -
Vium111g00008 467 FunFam protein kinase PINOID 174 242 - -
Vium111g00008 467 ProSiteProfiles Protein kinase domain profile. 81 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium111g00008 467 Pfam Protein kinase domain 310 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium111g00008 467 Pfam Protein kinase domain 81 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium111g00008 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Vium111g00008 467 Gene3D Phosphorylase Kinase; domain 1 79 173 - -
Vium111g00008 467 FunFam serine/threonine-protein kinase D6PK-like 308 434 - -
Vium111g00008 467 FunFam protein kinase PINOID 2 79 173 - -
Vium111g00008 467 SUPERFAMILY Protein kinase-like (PK-like) 61 440 IPR011009 -
Vium111g00008 467 PANTHER FLIPPASE KINASE 1-RELATED 39 439 - -
Vium111g00008 467 MobiDBLite consensus disorder prediction 431 448 - -
Vium111g00008 467 Gene3D Transferase(Phosphotransferase) domain 1 174 241 - -
Vium111g00008 467 Gene3D Transferase(Phosphotransferase) domain 1 309 434 - -
Vium111g00008 467 SMART serkin_6 81 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium111g00008 Vium-Chr111 91669 93926 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium111g00008 35 466 AGC Kinase Gene Family AT2G34650 65.367 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium111g00008 Pkinase 2.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium111g00008 - - vun:114177159 842.032