Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium111g00007 ATGCTAGAGCCTGGTGGTGCTGAACGTCATTCCGAGGCCAGTTTCGAGACTCTCAATTCTTCCATGCTTGGAAGCTCCATGAGCAGCGAGAGCATTTGCAGTACCAGTTTCAGCCGTCTTTCCTTCGATCTCCTCCCGCCCTCGCCGGAGAGTCTCTCCCTTAAGCCTCATCGCTCCTCCGACTTCGCCTACTCGGCCATTCGCTTTGCCGCCTTCTGCCGCAAGGCCGCCCTCACCTTCCGCGACTTCCACCTCCTCCGTCGCATCGGCTCCGGCGACATCGGTACCGTCTACCTCTGTCGCCTCCGAAACCGGCAATTCAACAGCCCCGTAGAGGACGAGGAGGATGAAGAGTGCTGTTTGTACGCGATGAAGGTGGTGGACAAAGACGCAGTGGCATTGAAGAAGAAGTCGCAGAGAGCGGAAATGGAGAGAAAAATCCTGAAGATGCTGGACCACCCGTTCCTTCCTACTCTCTACGCGGAGTTCGAAGCCTCTCATTTCTCTTGCATCGTGATGGAGTTTTGCTCCGGCGGAGACCTTCACTCGCTGCGCTTCAAGCACCCTCACAACCGTCTACCTCTCTCCTCCGCTAGATTTTATGCTGCGGAGGTGCTGGTGGCGTTGGAGTATTTACACATGCTGGGAATCATATACAGAGATTTAAAGCCCGAAAACGTGCTGGTGAGATCGGACGGTCACATCATGCTTTCTGATTTCGATCTCTCTCTTTGCTCGGATGCAATCCCAGCCGTTGAATCCTCAGATCCCTTAATACCTCACACTTACACTCACAGTTACACTCCCCCTCCCACTCGCTCGCATTCTTTTATCAGTCCATTCTCCTGCTTCTCGAACCGGGGTTTCCGGTCTCGTGACATGCGAGTCGTCGAACCGAACCGCCTCTTTGTAGCCGAACCGGTTTCGGCCCGCTCCTGCTCCTTCGTCGGAACCCACGAGTACGTCTCGCCAGAGGTTGCCTCCGGCAGGTCGCACGGTAACGCCGTTGACTGGTGGTCGTTTGGAGTATTTATCTACGAGCTTATATACGGTCGCACGCCGTACGCAGGTCCATCGAAGCAGGCTACGCTACGGAACATAGTGAAGAAGCCCCTGGCGTTCCCCACTGCCACGCCCGCGAGCTGTCTTGAACTCCACGCGCGAGATTTGATATCCGGCTTGCTGAACAAAGACCCGGCGCGTCGACTCGGGTCGAAGCGTGGCGCCGCTGACGTCAAGAAGCATCCCTTCTTCAAAGGGCTCAACCTGGCGCTGATTCGCATGCAGACGCCGCCCCTAGTGCCTAGCTCGAGAAGGTCCAAAACGACGTCGCTCTACCCCGCGAAGGGTAAAAGCAGCAGGAACCATCATAAACAGCATGAGACGGCGTCGTTTGAATTTTTCTTTTGA 1410 0.5574 MLEPGGAERHSEASFETLNSSMLGSSMSSESICSTSFSRLSFDLLPPSPESLSLKPHRSSDFAYSAIRFAAFCRKAALTFRDFHLLRRIGSGDIGTVYLCRLRNRQFNSPVEDEEDEECCLYAMKVVDKDAVALKKKSQRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRFKHPHNRLPLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDAIPAVESSDPLIPHTYTHSYTPPPTRSHSFISPFSCFSNRGFRSRDMRVVEPNRLFVAEPVSARSCSFVGTHEYVSPEVASGRSHGNAVDWWSFGVFIYELIYGRTPYAGPSKQATLRNIVKKPLAFPTATPASCLELHARDLISGLLNKDPARRLGSKRGAADVKKHPFFKGLNLALIRMQTPPLVPSSRRSKTTSLYPAKGKSSRNHHKQHETASFEFFF 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium111g00007 469 ProSiteProfiles Protein kinase domain profile. 83 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium111g00007 469 MobiDBLite consensus disorder prediction 433 450 - -
Vium111g00007 469 Gene3D Transferase(Phosphotransferase) domain 1 176 243 - -
Vium111g00007 469 Pfam Protein kinase domain 83 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium111g00007 469 Pfam Protein kinase domain 312 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium111g00007 469 FunFam protein kinase PINOID 2 81 175 - -
Vium111g00007 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Vium111g00007 469 PANTHER FLIPPASE KINASE 1-RELATED 25 441 - -
Vium111g00007 469 SMART serkin_6 83 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium111g00007 469 Gene3D Phosphorylase Kinase; domain 1 81 175 - -
Vium111g00007 469 Gene3D Transferase(Phosphotransferase) domain 1 311 436 - -
Vium111g00007 469 MobiDBLite consensus disorder prediction 433 459 - -
Vium111g00007 469 FunFam serine/threonine-protein kinase D6PK-like 310 436 - -
Vium111g00007 469 FunFam protein kinase PINOID 176 244 - -
Vium111g00007 469 SUPERFAMILY Protein kinase-like (PK-like) 62 442 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium111g00007 Vium-Chr111 72432 74698 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium111g00007 8 468 AGC Kinase Gene Family AT2G34650 63.441 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium111g00007 Pkinase 2.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium111g00007 - - vun:114177159 849.736