Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11199g00002 ATGCTAACCAGAGTTTCTTCGCAGCCATATCTTCATGAATCTCGTCATCAGCATGCTATGAGAAGAGCAAGAGGTAACGGAGGGCGTTTTGCAAAGAAAACTGATGTCGAAGTTTCAAAACACACGAACAAGGAAAAGGATACGGGTGCAGCAGTTCCAGTTTCATTGCCACAGTCAGTTAGTTCATCTGGGTTGGGACCAGTACCCTCTGAAGTGCATGAGAGATTTGAAAAACACAATTACGCAAATGTTTTGCAGTCATCATCTGCGTTCTGTTTGCACTCCGGTGAGAGAGTAGAGGAGGGAGACTGTTCAGGTCAACAACGAGGAAGCATCTCCTCTGAGCAAAGCTCACAGAGGCGTCTTGCTATTCAGTAA 378 0.4577 MLTRVSSQPYLHESRHQHAMRRARGNGGRFAKKTDVEVSKHTNKEKDTGAAVPVSLPQSVSSSGLGPVPSEVHERFEKHNYANVLQSSSAFCLHSGERVEEGDCSGQQRGSISSEQSSQRRLAIQ 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11199g00002 125 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 8 99 IPR001289 GO:0003700|GO:0006355
Vium11199g00002 125 MobiDBLite consensus disorder prediction 1 70 - -
Vium11199g00002 125 Gene3D - 1 35 - -
Vium11199g00002 125 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 5 30 IPR001289 GO:0003700|GO:0006355
Vium11199g00002 125 MobiDBLite consensus disorder prediction 28 47 - -
Vium11199g00002 125 MobiDBLite consensus disorder prediction 97 125 - -
Vium11199g00002 125 ProSiteProfiles NF-YA/HAP2 family profile. 1 33 IPR001289 GO:0003700|GO:0006355
Vium11199g00002 125 MobiDBLite consensus disorder prediction 106 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11199g00002 Vium-Chr11199 6695 7447 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11199g00002 6 125 CCAAT-HAP2 Transcription Factor Family AT3G20910 48.333 2.42e-22 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vium11199g00002 CBFB_NFYA 2.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11199g00002 K08064 - vum:124820487 229.95