Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11188g00007 ATGGGAACACAACCCCGGCAAACATTTCGAGAGGAGGAGGAGGAGGAGCTGCCATGCCGTGGAACTATCTCAGGTCAATCAATGTCAACTAGCAGAAGTGTTGGGTCACCATCCAGCCGGAGTGAGCAGACAATGGCAACACCAGCTAGTGATAACACCTTTCTGAGGTTAAATAATCTTGACATACATGGTGATGACGCTGGATCACAGGGTGCAGTTGCTAGCAAGAAGAAAAAGAGGGGCCAACGCACTGTTGGTGGTGACAAGAGTGGAAGAGGTCTCCGCCAATTTAGTATGAAAGTCTGTGAGAAGGTAGAAAGCAAGGGGAGAACAACTTACAATGAGGTAGCTGATGAACTTGTAGCTGAATTTGCTGATCTAAGCAATGGTGCTTCAACTCCTGATCAGCAACAATATGACGAGAAAAACATCCGTCGGAGGGTGTATGATGCTTTGAATGTTCTAATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGCACAAGTCTAAGCGATATTGAAGATCTAAAGAATGAACGTCTTGGGCTAAGGAATAGAATTGAAAAGAAAGCATCCTATTTGCAAGAACTGGAGGATCAATACATAGGTCTCCAGAAACTTATAGAACGAAATGAGCAATTATATAGCTCCGGGAATGCTCCCAATGGAGGTGTATCTTTACCCTTCATTCTGGTGCAGACACGCCCCCACGCAACTGTTGAAGTAGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCCTTTGAGCTGCATGATGATAACTATGTTCTCAAGGCAATGAAATTTTGTGAGAGATCTCAGAATGACAACAAACCAGACAATCCTCCAGATGGCGGGGAAGGTTCTAGTATGTCTAGTTTGTATCATGCACAGATTCCTAGTTCAGTTTCAAACCCTCCTGCGAGACCTCCTTCATCTCCACCACTCCCTGGAATATTGAAGGCAAGAGTTAAGAACGAGCATTGA 1026 0.4376 MGTQPRQTFREEEEEELPCRGTISGQSMSTSRSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDDAGSQGAVASKKKKRGQRTVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADLSNGASTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDIEDLKNERLGLRNRIEKKASYLQELEDQYIGLQKLIERNEQLYSSGNAPNGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERSQNDNKPDNPPDGGEGSSMSSLYHAQIPSSVSNPPARPPSSPPLPGILKARVKNEH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11188g00007 341 SMART E2F_TDP_2 89 172 IPR003316 GO:0005667|GO:0006355
Vium11188g00007 341 SUPERFAMILY "Winged helix" DNA-binding domain 92 173 IPR036390 -
Vium11188g00007 341 Coils Coil 202 222 - -
Vium11188g00007 341 FunFam Transcription factor-like protein DPB 84 177 - -
Vium11188g00007 341 Gene3D Transcription factor DP 178 295 IPR038168 -
Vium11188g00007 341 CDD DP_DD 177 280 IPR014889 -
Vium11188g00007 341 Pfam Transcription factor DP 180 307 IPR014889 -
Vium11188g00007 341 FunFam Transcription factor-like protein DPB 178 302 - -
Vium11188g00007 341 SMART DP_2 179 339 IPR014889 -
Vium11188g00007 341 Pfam E2F/DP family winged-helix DNA-binding domain 92 172 IPR003316 GO:0005667|GO:0006355
Vium11188g00007 341 PANTHER TRANSCRIPTION FACTOR DP 21 321 IPR015648 GO:0005667|GO:0051726
Vium11188g00007 341 Gene3D - 84 177 IPR036388 -
Vium11188g00007 341 MobiDBLite consensus disorder prediction 299 316 - -
Vium11188g00007 341 MobiDBLite consensus disorder prediction 1 92 - -
Vium11188g00007 341 MobiDBLite consensus disorder prediction 286 341 - -
Vium11188g00007 341 MobiDBLite consensus disorder prediction 22 57 - -
Vium11188g00007 341 PIRSF Txn_factor_DP 4 341 IPR015648 GO:0005667|GO:0051726
Vium11188g00007 341 SUPERFAMILY E2F-DP heterodimerization region 179 293 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11188g00007 Vium-Chr11188 20486 26037 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11188g00007 79 288 E2F-DP Transcription Factor Family AT5G02470 53.774 1.40e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vium11188g00007 DP 2.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11188g00007 K04683 - gmx:100781272 563.148