Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11188g00006 ATGGGAACACAACCCCGGCAAACATTTCGAGAGGAGGAGGAGGAGGAGCTGCCATGCCGTGGAACTATCTCAGGTCAATCAATGTCAACTAGCAGAAGTGTTGGGTCACCATCCAGCCGGAGTGAGCAGACAATGGCAACACCAGCTAGTGATAACACCTTTCTGAGGTTAAATAATCTTGACATACATGGTGATGACGCTGGATCACAGGGTGCAGTTGCCAAGAAGAAAAAGAGGGGCCAACGCACTGTTGGTGGTGACAAGAGTGGAAGAGGTCTCCGCCAATTTAGTATGAAAGTCTGTGAGAAGGTAGAAAGCAAGGGGAGAACAACTTACAATGAGGTAGCTGATGAACTTGTAGCTGAATTTGCTGATCTAAGCAATGGTGCTTCAACTCCTGATCAGCAACAATATGACGAGAAAAACATCCGTCGGAGGGTGTATGATGCTTTGAATGTTCTAATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGCACAAGTCTAAGCGATATTGAAGATCTAAAGAATGAACGTCTTGGGCTAAGGAATAGAATTGAAAAGAAAGCATCCTATTTGCAAGAACTGGAGGATCAATACATAGGTCTCCAGAAACTTATAGAACGAAATGAGCAATTATATAGCTCCGGGAATGCTCCCAATGGAGGTGTATCTTTACCCTTCATTCTGGTGCAGACACGCCCCCACGCAACTGTTGAAGTAGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCCTTTGAGCTGCATGATGATAACTATGTTCTCAAGGCAATGAAATTTTGTGAGAGATCTCAGAATGACAACAAACCAGACAATCCTCCAGATGGCGGGGAAGGTTCTAGTATGTCTAGTTTGTATCATGCACAGATTCCTAGTTCAGTTTCAAACCCTCCTGCGAGACCTCCTTCATCTCCACCACTCCCTGGAATATTGAAGGCAAGAGTTAAGAACGAGCATTGA 1023 0.4379 MGTQPRQTFREEEEEELPCRGTISGQSMSTSRSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDDAGSQGAVAKKKKRGQRTVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADLSNGASTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDIEDLKNERLGLRNRIEKKASYLQELEDQYIGLQKLIERNEQLYSSGNAPNGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERSQNDNKPDNPPDGGEGSSMSSLYHAQIPSSVSNPPARPPSSPPLPGILKARVKNEH 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11188g00006 340 MobiDBLite consensus disorder prediction 285 340 - -
Vium11188g00006 340 SUPERFAMILY E2F-DP heterodimerization region 178 292 IPR037241 -
Vium11188g00006 340 MobiDBLite consensus disorder prediction 1 91 - -
Vium11188g00006 340 PIRSF Txn_factor_DP 4 340 IPR015648 GO:0005667|GO:0051726
Vium11188g00006 340 SMART DP_2 178 338 IPR014889 -
Vium11188g00006 340 CDD DP_DD 176 279 IPR014889 -
Vium11188g00006 340 FunFam Transcription factor-like protein DPB 177 301 - -
Vium11188g00006 340 Gene3D - 83 176 IPR036388 -
Vium11188g00006 340 MobiDBLite consensus disorder prediction 298 315 - -
Vium11188g00006 340 FunFam Transcription factor-like protein DPB 83 176 - -
Vium11188g00006 340 Pfam E2F/DP family winged-helix DNA-binding domain 91 171 IPR003316 GO:0005667|GO:0006355
Vium11188g00006 340 SUPERFAMILY "Winged helix" DNA-binding domain 91 172 IPR036390 -
Vium11188g00006 340 Pfam Transcription factor DP 179 307 IPR014889 -
Vium11188g00006 340 Gene3D Transcription factor DP 177 294 IPR038168 -
Vium11188g00006 340 MobiDBLite consensus disorder prediction 22 57 - -
Vium11188g00006 340 Coils Coil 201 221 - -
Vium11188g00006 340 PANTHER TRANSCRIPTION FACTOR DP 21 320 IPR015648 GO:0005667|GO:0051726
Vium11188g00006 340 SMART E2F_TDP_2 88 171 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11188g00006 Vium-Chr11188 20486 26037 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11188g00006 78 287 E2F-DP Transcription Factor Family AT5G02470 53.774 1.53e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vium11188g00006 DP 2.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11188g00006 K04683 - gmx:100797603 565.074