Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11188g00002 ATGTTAAGTGTAGCTCCTTCTGTTGATACCAATACTACCAAAGAGATGCCTGCAACAAAAACAGAGCAGAACCAAATTCCTCAGACTACCCATGTATTCAAATCAAAATTACCAGACATACCAATCTCCAACCACATGCCCCTCCATGCTTACTGCTTCGAAAACCTCTCCAAATTCGCCGACCGTCCTTGCCTCATCGTCGGCTCCGCCGCCAAAACCTACACTTACGCAGAGACTCACCTTATATCACGCAAGATTGCAGCCGGATTCTCGAACCTCGGCATCCGAAAGGGCGACGTCGTCATGATCCTCCTCCAGAACTCCGCCGAGTTCGTCCTCTCCTTCCTCGCCGCCTCCATGATCGGTGCCGTTGCCACCACCGCCAACCCGTTCTACACCGCCGCCGAGATCTTCAAGCAGTTCGGCGCCTCCAAGGCGAAGCTCATCATAACTCAGGCAATGTACGTGGACAAGCTCCGCAACCACGACGGCGGATGGAGCCTCGGCGAGGACTTCAAGGTCGTGACCGTGGACGATCCGCCGGAGAACTGCCTCCACTTCTCGGTGCTCTCGGAGGCGAACGAGAACGACGTTCCGGAGGTGGAGATCCATCCGGACGACGCGGTGGCGCTTCCGTTCTCCTCCGGCACCACGGGGTTACCGAAAGGAGTGATTCTGACTCACAAGAGTTTAACCACGAGCGTGGCGCAACAGGTGGACGGGGAGAACCCTAACCTCTACCTCACTACCGAGGACGTACTCCTCTGCGTGCTCCCGCTCTTTCACATATTCTCGCTCAACAGTGTGCTGTTATGCGCGCTGAGAGCCGGGAGTGGCGTTTTGCTGATGCAGAAGTTCGAGATTGGGACGCTGCTGGAGCTCATACAGCGCTACCGCGTGTCGGTGGCCATGGTGGTGCCTCCCTTGGTGCTGGCGCTGGCAAAGAATCCGATGGTCGCGAATTTTGACCTCAGTTCAATACGGTTAGTTCTCTCCGGTGCCGCTCCCTTGGGTAAGGAGCTCGAAGACGCCCTCCACAGCAGGGTGCCTCACGCTGTTTTGGGACAGGGTTACGGGATGACAGAAGCAGGGCCAGTCCTTTCCATGTGCTTGGGCTTTGCAAAACAACCATTCCCAACAAAATCGGGATCTTGTGGAACCGTTGTCAGAAATGCAGAGCTAAAGGTGGTTGACCCTGAAACTGGTCGTTCTCTTGGCTACAATCAACCCGGTGAAATTTGCATCCGAGGGCTACAGATCATGAAAGGATATCTGAACGACGACCAAGCGACGGCATCGACCATCGACGCGGAGGGTTGGCTTCACACCGGTGATGTTGGCTATGTAGATGATGATGACGAAATTTTCATTGTTGACAGGGTGAAAGAACTCATTAAGTTTAAAGGCTTCCAGGTGCCCCCTGCAGAACTCGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCAGACGCCGCAGTTGTCCCACAAAAGGATGTTGTTGCCGGTGAACTTCCCGTTGCTTTCGTTGTCAGATCTAACGGCTTTGATCTAACAGAAGAGGCTGTGAAAGAGTTTATAGCTAAACAGGTGGTGTTCTACAAAAGACTGCACAAAGTTTATTTTGTTCATGCTATTCCCAAGTCTCCGTCGGGGAAGATATTAAGGAAAGATCTGAGAGCAAAGCTTGAAGCAGCCGCCGCCGCCGCCGCCGTCACTCCGACGCCTTAA 1725 0.5374 MLSVAPSVDTNTTKEMPATKTEQNQIPQTTHVFKSKLPDIPISNHMPLHAYCFENLSKFADRPCLIVGSAAKTYTYAETHLISRKIAAGFSNLGIRKGDVVMILLQNSAEFVLSFLAASMIGAVATTANPFYTAAEIFKQFGASKAKLIITQAMYVDKLRNHDGGWSLGEDFKVVTVDDPPENCLHFSVLSEANENDVPEVEIHPDDAVALPFSSGTTGLPKGVILTHKSLTTSVAQQVDGENPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSGVLLMQKFEIGTLLELIQRYRVSVAMVVPPLVLALAKNPMVANFDLSSIRLVLSGAAPLGKELEDALHSRVPHAVLGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVVDPETGRSLGYNQPGEICIRGLQIMKGYLNDDQATASTIDAEGWLHTGDVGYVDDDDEIFIVDRVKELIKFKGFQVPPAELEGLLVSHPSIADAAVVPQKDVVAGELPVAFVVRSNGFDLTEEAVKEFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKDLRAKLEAAAAAAAVTPTP 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11188g00002 574 FunFam Long-chain-fatty-acid--CoA ligase FadD 34 462 - -
Vium11188g00002 574 Gene3D - 23 461 IPR042099 -
Vium11188g00002 574 SUPERFAMILY Acetyl-CoA synthetase-like 38 563 - -
Vium11188g00002 574 Pfam AMP-binding enzyme C-terminal domain 476 551 IPR025110 -
Vium11188g00002 574 ProSitePatterns Putative AMP-binding domain signature. 211 222 IPR020845 -
Vium11188g00002 574 Gene3D - 462 566 IPR045851 -
Vium11188g00002 574 MobiDBLite consensus disorder prediction 1 28 - -
Vium11188g00002 574 FunFam 4-coumarate--CoA ligase 2 463 564 - -
Vium11188g00002 574 Pfam AMP-binding enzyme 54 467 IPR000873 -
Vium11188g00002 574 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 29 559 - -
Vium11188g00002 574 CDD 4CL 42 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11188g00002 Vium-Chr11188 3570 10269 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11188g00002 27 474 Monolignol Biosynthesis Gene Families AT1G65060 71.619 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11188g00002 K01904 - gmx:547492 988.408