Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11178g00001 ATGCAGATATTCGTGAAAACCCTTACGGGGAAGATCACCTTGAGGTGGAGTCTTCTTGACACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCACCGGATCAGCAGCGTCTCATCTTCGCAGGAAAGCAACTCGAGGACGGCCGCACTCTCGCGGACTACAACATCCAGAAAGAGTCCACTCTCCACCTCGTCCTCCGTCTCCGCGGTGGCGCCAAGAAGCGCAAAAAGAAGACTTATACCAAACCTAAGAAAATCAAACACAAGCATAAAAAGGTGAAGCTCTCTGTCTTGCAATTCTATAAGGTGGACGACTCCGGCAAGGTGCAGAGGCTCCGCAAGGAGTGCCCCAACGCCGAGTGCGGCGCAGGAACCTTCATGGCCAATCATTTTGATCGTCACTACTGCGGAAAGTGCGGTCTAACTTATGTCTACCAGAAGGCCGGTGCCTACTCATTAATGTATTTGTATTTGTTTTCTTTATTATTTTTTTGTTTTTAA 513 0.4873 MQIFVKTLTGKTXTLRWSLLDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGAYSLMYLYLFSLLFFCF 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11178g00001 171 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vium11178g00001 171 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vium11178g00001 171 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vium11178g00001 171 Gene3D - 81 154 IPR038582 -
Vium11178g00001 171 FunFam Ubiquitin-60S ribosomal protein 1 77 - -
Vium11178g00001 171 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Vium11178g00001 171 SUPERFAMILY Zn-binding ribosomal proteins 100 153 IPR011332 GO:0006412
Vium11178g00001 171 SMART Ribosomal_S27_2 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Vium11178g00001 171 Pfam Ribosomal protein S27a 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Vium11178g00001 171 PANTHER UBIQUITIN 1 89 - -
Vium11178g00001 171 CDD Ubl_ubiquitin 1 76 - -
Vium11178g00001 171 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vium11178g00001 171 SMART ubq_7 1 72 IPR000626 GO:0005515
Vium11178g00001 171 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vium11178g00001 171 Gene3D - 1 80 - -
Vium11178g00001 171 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11178g00001 Vium-Chr11178 5175 5738 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11178g00001 1 153 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 88.235 1.34e-85 246