Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1116g00008 ATGGCACTGGCCAAAGACCAAAACATTCCACATGATTCAACCATGAGCACCAAGGTTCCAAACTGTGTTTTCAGTGAGGCCGTGGAAACTACCTCAGTGACCGTTCATAGGGTCAATGAGTACCACAAATCAGTTATAGAAGAGGAAAATGGCTCACAAACTACCAATGGCCTCAGCAATGATTCAGGTATAACGCATTCTCCTCCTCTATCCGGCAGTGGCAAAGGGTATACTTATAAGGAGAAAAGTTACCAGCTTGACGAAGAAGAATCACTGATTCATTTCAAAGGGTACAGCAATCTCATGCAAGGTGGTGAATCTTTGCTTAGCTTTCAGCATAACAGGCTGGTCCCTAACAGTTGTTACTCGAAAGATATTAGTCAGAAAGAGTACTGTGTTTGGGAGAATAGTTTGCATCAAGGTCATAACCACTGGAATCAGCATAGTCCAAGAAGTAATCAAGACATGCGCCTGGTGCAGGATTTCAATTGCTTTCAAACTGCTAGTGGCTATGGCTCCATGGTCGACAATGCAAAAGAGAAGCAATATGGCGAACGTTCATCAGGGTGGCTATACTCAGCATCAACTATCCCTAATGATAAGAGCCTCCACAATTTAGCAGCACGAGAGATGGTGTTGCAAAAGCGTCCTTCTATGGGAGAGAGCATGAAAGCTGCAAAGAAGCAATGCTCAACTGAGAGCAAAACGCTAAAACATAAGTCAAGCCCCTCCAAGGATCCTCAAAGTGTGGCTGCCAAGAATCGAAGAGAGAGGATAAGTGAACGACTGAAGATACTACAAGAACTAGTGCCTAACGGCTCCAAGGTTGATATGGTTACCATGCTGGAGAAAGCAATTAGCTACGTCAAGTTTCTTCAACTTCAAGTGAAAGTGCTGGCAACTGATGAATTTTGGCCTGCGCAAGGTGGAAAACCTCCTGATATTTCTCAAGTAAAGGAAGTCATCGATGCCATTCGTTCATCACAAAGAGAGAGAAGTTTAAACTCAAAGTAG 1014 0.4369 MALAKDQNIPHDSTMSTKVPNCVFSEAVETTSVTVHRVNEYHKSVIEEENGSQTTNGLSNDSGITHSPPLSGSGKGYTYKEKSYQLDEEESLIHFKGYSNLMQGGESLLSFQHNRLVPNSCYSKDISQKEYCVWENSLHQGHNHWNQHSPRSNQDMRLVQDFNCFQTASGYGSMVDNAKEKQYGERSSGWLYSASTIPNDKSLHNLAAREMVLQKRPSMGESMKAAKKQCSTESKTLKHKSSPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDMVTMLEKAISYVKFLQLQVKVLATDEFWPAQGGKPPDISQVKEVIDAIRSSQRERSLNSK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1116g00008 337 MobiDBLite consensus disorder prediction 44 78 - -
Vium1116g00008 337 MobiDBLite consensus disorder prediction 48 72 - -
Vium1116g00008 337 Pfam Helix-loop-helix DNA-binding domain 253 293 IPR011598 GO:0046983
Vium1116g00008 337 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 115 301 IPR045843 GO:0003700|GO:0006355
Vium1116g00008 337 Gene3D - 237 300 IPR036638 GO:0046983
Vium1116g00008 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 303 IPR036638 GO:0046983
Vium1116g00008 337 MobiDBLite consensus disorder prediction 216 256 - -
Vium1116g00008 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 292 IPR011598 GO:0046983
Vium1116g00008 337 FunFam Transcription factor bHLH83 241 300 - -
Vium1116g00008 337 CDD bHLH_AtIND_like 244 306 - -
Vium1116g00008 337 SMART finulus 249 298 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1116g00008 Vium-Chr1116 78762 80615 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1116g00008 75 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 45.769 1.68e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium1116g00008 HLH 7.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1116g00008 - - gmx:100810010 537.339