Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1116g00006 AAAGCCTTGCTCAACCTCGCCGTCAAGGACGAAAAGAACAAAATCAATATTGTGGAGGCTGGTGCATTAGAACCGATAGTTAGTTTCCTAAAGTCTCAAAATGTAAATCTGCAGGAGTCTGCAACTGCATCATTGCTCACACTATCTGCCTCTTCGACCAACAAACCAATTATCAGTGCTTGTGGTGCCATTCCTCTTCTTGTAGAGGTCCTTAGAGATGGAAGCCCCCAAGCTAAAGCTGATGCAGTAATGGCTCTTTCTAATTTATCAACTCACCCTACTAATCTCAGTACCATTCTCGAGACAAACCCAATCCCTTTCATAGTTGATCTTCTTAAAACCTGTAAAAAGTCCTCAAAAACAGCTGAAAAATGCTGCGCTTTGATAGAATCCTTGGTGGATTATGACGAGGGCAGAACTGCCCTGACATCTGAGGAAGGCGGGATTCTGGCAGTTGTGGAAGTTCTTGAAAGTGGCACTCTCCAAAGTAGGGAGCATGCTGTTGGAGCACTGTTGACAATGTGCCAAAGCGATCGATGTAAATACCGGGAACCAATTCTAAGAGAAGGTGTCATTCCAGGACTTCTTGAGCTTACTGTTCAAGGGACACCTAAGTCTCAGTCAAAAGCACGCACCCTTTTGCAGTTACTGCGAGAGTCTCCTTATCCGAGATCTGAAATTCAACCTGACACTCTGGAGAATATAGTGTGCAACATCATATCACAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTTCAAGTAAGCATGGAACAAAGTCTGAGACATTTACAACAAAGGGCTCTCGTCTGCACCCCAAGTGATCTTCCTATCGCTGGCTGTGCTTCTGAAGTTTCTTCAAAATGA 888 0.4426 KALLNLAVKDEKNKINIVEAGALEPIVSFLKSQNVNLQESATASLLTLSASSTNKPIISACGAIPLLVEVLRDGSPQAKADAVMALSNLSTHPTNLSTILETNPIPFIVDLLKTCKKSSKTAEKCCALIESLVDYDEGRTALTSEEGGILAVVEVLESGTLQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQSKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVSSK 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1116g00006 295 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 21 63 IPR000225 GO:0005515
Vium1116g00006 295 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 62 104 IPR000225 GO:0005515
Vium1116g00006 295 PANTHER U BOX DOMAIN-CONTAINING 2 224 - -
Vium1116g00006 295 Pfam Armadillo/beta-catenin-like repeat 54 90 IPR000225 GO:0005515
Vium1116g00006 295 Pfam Armadillo/beta-catenin-like repeat 11 48 IPR000225 GO:0005515
Vium1116g00006 295 SUPERFAMILY ARM repeat 2 204 IPR016024 -
Vium1116g00006 295 SMART arm_5 136 176 IPR000225 GO:0005515
Vium1116g00006 295 SMART arm_5 51 91 IPR000225 GO:0005515
Vium1116g00006 295 SMART arm_5 10 50 IPR000225 GO:0005515
Vium1116g00006 295 SMART arm_5 92 134 IPR000225 GO:0005515
Vium1116g00006 295 FunFam U-box domain-containing protein 4 1 277 - -
Vium1116g00006 295 Gene3D - 1 224 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1116g00006 Vium-Chr1116 49590 53086 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1116g00006 2 218 U-box Gene Family AT2G23140 36.406 1.12e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1116g00006 - - gmx:100780954 534.258