Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11168g00009 ATGTTCTCGGAGTTGATGAACTTATTGAGGGCCTGCTTTCGGCCGGGTTCCGAAGGATTTTCTCGCACAGGTTCGGATGCTGGAGGTAGACAGGATGGACTACTGTGGTATAAGGACTCAGGGCAGCACTTGAATGGTGAATTTTCAATGGCTGTGATCCAAGCCAATAACTTGCTGGAAGATCAAAGCCAGATTGAATCAGGCAGTTTGAGCTCCAATGAATCTGGCCCTTATGGTACTTTCGTCGGTATATATGATGGCCATGGAGGGCCCGAGACATCGCGGTTTATCAATGATCACCTCTTTCACCATCTCAAGAAATTTACTTCAGAGCAACAATCAATGTCAGTAGATGTAATTCGCAAGGCATTCCAAGCAACAGAAGAGGGGTTTATGTCAGTGGTTGCCAATCAGTGGTCCCTGTCGCCACAAATTGCAGCTGTTGGCTCATGTTGTCTTGTTGGTGTTATTTGTAATGGAACCCTTTATATAGCAAACCTAGGGGATTCCCGGGCAGTTTTAGGAAGAGCGGTGAAGGCAACTGGTGAGGTTTTAGCCATGCAATTATCGGCAGAGCACAATGCATCAATAGAGTCTATAAGGGAGGAGCTGCGTTCTTTACATCCTGATGATCCAAATATTGTGGTTTTAAAGCATAGTGTATGGCGTGTGAAGGGCCTTATTCAAGTTTCTAAATCTATTGGTGATGTGTATTTGAAGAAGGCCGAGTTCAATAGGGAACCTCTATATGCTAAGTTTCGACTCCGGGAACCATTCAAGATGCCAATACTGAGCTCAGAGCCATCAATTTCAGTGCATCATTTGCAGCCAAATGATCAATTTATTATATTTGCATCTGATGGACTCTGGGAGCACCTTAGCAATCAAGAAGCAGTTGATATAGTTCAAAACAGTCCCCGCAGTGGAAGTGCAAGGAGGCTGGTGAAAGCTGCACTTCAAGAAGCTGCAAAGAAAAGAGAAATGAGATATTCAGATTTAAAGAAAATAGATCGTGGTGTTCGTCGTCATTTCCATGATGATACCACAGTGGTTGTTGTGTATCTTGACTCAAATCTTGGGAGTAGGACAAGCACTGCGAAGTTCCCTGGTATTTCTGTGAGAGGGGGTGGTATTAACCTGCCTCATAACACACTGGCACCTTGTACCACACCAACAGAGATTAGTGGTACCTGA 1194 0.4447 MFSELMNLLRACFRPGSEGFSRTGSDAGGRQDGLLWYKDSGQHLNGEFSMAVIQANNLLEDQSQIESGSLSSNESGPYGTFVGIYDGHGGPETSRFINDHLFHHLKKFTSEQQSMSVDVIRKAFQATEEGFMSVVANQWSLSPQIAAVGSCCLVGVICNGTLYIANLGDSRAVLGRAVKATGEVLAMQLSAEHNASIESIREELRSLHPDDPNIVVLKHSVWRVKGLIQVSKSIGDVYLKKAEFNREPLYAKFRLREPFKMPILSSEPSISVHHLQPNDQFIIFASDGLWEHLSNQEAVDIVQNSPRSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDTTVVVVYLDSNLGSRTSTAKFPGISVRGGGINLPHNTLAPCTTPTEISGT 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11168g00009 397 CDD PP2Cc 48 355 IPR001932 -
Vium11168g00009 397 Pfam Protein phosphatase 2C 71 324 IPR001932 -
Vium11168g00009 397 FunFam Phosphatase 2C family protein 36 365 - -
Vium11168g00009 397 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Vium11168g00009 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Vium11168g00009 397 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Vium11168g00009 397 SMART PP2C_4 39 353 IPR001932 -
Vium11168g00009 397 PANTHER PROTEIN PHOSPHATASE 39 354 IPR015655 GO:0004722|GO:0006470
Vium11168g00009 397 Gene3D - 37 364 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11168g00009 Vium-Chr11168 42416 46832 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11168g00009 1 396 PP2C-type Phosphatase Gene Family AT4G38520 74.242 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11168g00009 - K01102 gmx:100790374 746.117