Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11162g00001 ATGTGCAAAGGCGTGGAAGGGAAAAAGCTTGGTGGTTCATGCAGAAGCTTACCACCTGAAGGGAATTCTTCATTTGCTGCAACAAGAGGTTGTTCAACATCTTGTGAGCTGTGTGGTTTGCAAGCTTCATTGTATTGTCAGGCAGATGATGCATATTTGTGCAGAAAATGTGACGAATGGGTTCACAGGGCCAATTTTTTGGCCCTTAGACATGTGAGGAGCTTTTTGTGCAAAACATGTCAGAACCTTACACACAGATATCTGATCGGAATCTCATCAGAGATCCTTCTTCCA 294 0.4354 MCKGVEGKKLGGSCRSLPPEGNSSFAATRGCSTSCELCGLQASLYCQADDAYLCRKCDEWVHRANFLALRHVRSFLCKTCQNLTHRYLIGISSEILLP 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11162g00001 98 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 34 84 - -
Vium11162g00001 98 Pfam B-box zinc finger 33 71 IPR000315 GO:0008270
Vium11162g00001 98 CDD Bbox1_BBX-like 35 76 - -
Vium11162g00001 98 SMART bboxneu5 30 76 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11162g00001 Vium-Chr11162 1990 2283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11162g00001 1 98 C2C2-CO-like Transcription Factor Family AT3G21890 46.602 4.00e-24 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium11162g00001 zf-B_box 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11162g00001 - - gmx:100500322 134.42