Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1115g00002 ATGGCAGAGAGTTCTTCGTCATTGGCTGTGCCCACTTCTCCCACTAAGTATGATGTGTTTCTCAGCTTCAGGGGGGAAGACACACGTCACAACTTCGTCAGTCACCTTCACGCAGCGCTGCACAGGAACCACATCGAAGCATATATTGATGAGAGAGAACAAAAGGGCGAAGAAATTTCGCCTGCACTCCAAACTGCGATAGAAGAATCAAAGATCTATGTCCTTGTTTTCTCCGAAAACTATGCATCTTCGACTTGGTGCTTGAATGAACTGACTAGTATACTAAACTGCAAGAAGAGATATAGAAGAGACGTGATACCGATTTTCTACAAAGTGGATCCATCAACTGTCAGGAAGCAGGAAAAAAGATACAAAGCAGCTTTCGAAGAGTATGAACAGCGGTTTAAGGACGACATGGACAAAGTGCAAGGATGGAAGGATGCTCTAACCGAAGCTGCTGGACTCTCCGGTCTTGAACAAATTGTGAAAGATATTTTGAAAAAAATGAATCTTGATTCCATTAGTTATGATCAAGGAATTATCGGCATTGAAAAACATATTGAAAAAATTCGGTTCTTGATGCATTTTGAGTCATCAGATATTCGGATCATAGGAATTTGTGGCATGGGAGGAATAGGAAAGACTACAATTTCTGAACAAATATATCACACATTTGCAAAGCAATTTGAGTCCAGAAGCCTTGTTTTAGACACTAAAAAAATAGAAAGAGATGGAATAGCCACTGTCAGAGAAAAATATATGTCTGAGCTTCTAAATGAAGTACCATCCTTTAGGTTATACTACAGTGAAAGACTCAAACGAATGAGGATTCTCATCATTCTTGATGATGTTACCGATTCAGTTCAAGTTAAACAATTGGTAGGAAGGCTTGATAGTTTTGGACAAGGCAGTAGAATCATTATAACCAGTAGAGACGGACAAGTGTTAAAGAATGCTGGAGCTGATGACATCTACGAAGTTAAGGAGTTGAATTATCTTGATTCTCTACAACTTTTTAATTGGCATGCTTTTAAACAAAATTCTTCAAAAGCAAATGCTTACATGAACTTGTCAATAGAGATGTTGAGATATGCAAAAGGAATTCCATTAGCTCTCCAAGTTGTGGGTTCATTACTTTATGATAGAGAAACAGAAGTATGGGAAAGTCAGTTGCAAAAGTTGGAGAAGTGCCAAGATCTTGATATTTTCAATGTATTAAAATTAAGTTATGATGAGCTTGATGAGGAGCAGAAAAATATATTTCTTGATATGGCTTGCTTTTACAGAGGACATGAGGAAATTGTGGTTGCAGAAAGACTAGAAGATTGTGGTTTCTCTTCTTTAATTGGAATTGATGTTCTCAAAGATAAATGTCTAATATCTGTCTTGGACGGTAGAATTATGATGCACGATCTAATACAAGATATGGGTCAAGAAATTATTCGTAAAGAGTGTCCACAACATCCTGGAAAACGCAGTCGATTGTTGAAAGTTGATGAAATTCATGAGGTTTTAAAACTCGAAGAAGGTGTGCCTTTAAACTTTCCAAGTCTCAAGAAGCTCTGTTTCATAAATTTCTTTAACTGTTCTTCCCTTACAACCTTCCCATGTGACCTTTCTGAGACGAAATTCCTGAAGCAACTTTGTCTCTGTCTTTGCTTAAAATTGGAAAATTTCCCCGAAATTGAGGACACGGTGGAAGGTCTAGCGGTTCTCATCTTAGACGGCACAGCCATACAGGCACTACCTTCATCCTTGTGGCGTCTGGTAGGGCTTGAACAACTGAGTTTGCGAGATTGCAAGAATCTTGAGATTATTCCATCTTCCATTGGAAGCCTCACCAGACTATGCAAAGTAGACCTTACCTACTGTAAATCACTTCAAACTTTTCCAAGTACCATTTTCAATTTGAAGTTGAGGAAACTTGATTTGTGTGGTTGCTTAAAGTTGAAGACCTTCCCAGAGATCACGGAGCAGGCACAAACTTTTGCTCACATAAACTTAACAGAAACGGCTATCAAAGATCTGCCTTCCTCATTTGGCAATTTGATTAATCTTCGATCCCTGCAGCTCAACAAATGCAGGGATCTCGAATCACTCCCAAACTCTATTGTTAATCTAAAGCATCTCTGTAAACTTGATTGTTCGGGATGTGCCAAATTAACAGAAATCCCAACACACATTGGTAGCCTGTCGTCATTAATGGAACTGTCACTGAGTGAGAGTGGAATCGTGAACCTTCCGGAAAGCATTGCTAATCTTACAAGCTTGAAATCACTTGATTTGAGTGGCTGCAAAAATCTTGAATGCATCCCAAAGATTCCAACGTTTCTAAAACAACTGGTGGCATTGGATTGCCCATCCATTAGACAAGTGAGGTCAAATTCTCTTGTTCAAAACCTCTCAAATTCCAAAGAGAGTTTCTTCAATTTTCATTTGACCAATGCTCAACAACTGGATTCGGGTGCTCGTGCTAACATTGAGGAGGATGCAAGGCTTAGGATGAGCATGTCATGGGCCCAGAGGAGAATATTCCTCTTCAGGTAG 2547 0.3918 MAESSSSLAVPTSPTKYDVFLSFRGEDTRHNFVSHLHAALHRNHIEAYIDEREQKGEEISPALQTAIEESKIYVLVFSENYASSTWCLNELTSILNCKKRYRRDVIPIFYKVDPSTVRKQEKRYKAAFEEYEQRFKDDMDKVQGWKDALTEAAGLSGLEQIVKDILKKMNLDSISYDQGIIGIEKHIEKIRFLMHFESSDIRIIGICGMGGIGKTTISEQIYHTFAKQFESRSLVLDTKXKIERDGIATVREKYMSELLNEVPSFRLYYSERLKRMRILIILDDVTDSVQVKQLVGRLDSFGQGSRIIITSRDGQVLKNAGADDIYEVKELNYLDSLQLFNWHAFKQNSSKANAYMNLSIEMLRYAKGIPLALQVVGSLLYDRETEVWESQLQKLEKCQDLDIFNVLKLSYDELDEEQKNIFLDMACFYRGHEEIVVAERLEDCGFSSLIGIDVLKDKCLISVLDGRIMMHDLIQDMGQEIIRKECPQHPGKRSRLLKVDEIHEVLKLEEGVPLNFPSLKKLCFINFFNCSSLTTFPCDLSETKFLKQLCLCLCLKLENFPEIEDTVEGLAVLILDGTAIQALPSSLWRLVGLEQLSLRDCKNLEIIPSSIGSLTRLCKVDLTYCKSLQTFPSTIFNLKLRKLDLCGCLKLKTFPEITEQAQTFAHINLTETAIKDLPSSFGNLINLRSLQLNKCRDLESLPNSIVNLKHLCKLDCSGCAKLTEIPTHIGSLSSLMELSLSESGIVNLPESIANLTSLKSLDLSGCKNLECIPKIPTFLKQLVALDCPSIRQVRSNSLVQNLSNSKESFFNFHLTNAQQLDSGARANIEEDARLRMSMSWAQRRIFLFR 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1115g00002 849 Gene3D Ribonuclease Inhibitor 506 663 IPR032675 -
Vium1115g00002 849 Gene3D Ribonuclease Inhibitor 664 816 IPR032675 -
Vium1115g00002 849 Gene3D - 166 325 IPR027417 -
Vium1115g00002 849 SMART till_3 16 155 IPR000157 GO:0007165
Vium1115g00002 849 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 157 IPR035897 -
Vium1115g00002 849 Gene3D - 14 165 IPR035897 -
Vium1115g00002 849 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 703 IPR044974 GO:0006952
Vium1115g00002 849 ProSiteProfiles TIR domain profile. 15 169 IPR000157 GO:0007165
Vium1115g00002 849 Pfam NB-ARC domain 184 399 IPR002182 GO:0043531
Vium1115g00002 849 Pfam TIR domain 16 169 IPR000157 GO:0007165
Vium1115g00002 849 PRINTS Disease resistance protein signature 272 286 - -
Vium1115g00002 849 PRINTS Disease resistance protein signature 366 380 - -
Vium1115g00002 849 PRINTS Disease resistance protein signature 203 218 - -
Vium1115g00002 849 PRINTS Disease resistance protein signature 753 769 - -
Vium1115g00002 849 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 424 IPR027417 -
Vium1115g00002 849 SUPERFAMILY L domain-like 470 795 - -
Vium1115g00002 849 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 176 - -
Vium1115g00002 849 Gene3D - 330 415 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1115g00002 Vium-Chr1115 16615 25153 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1115g00002 12 761 WRKY Transcription Factor Family AT4G12020 30.285 1.95e-83 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1115g00002 - - vum:124825008 1638.24