Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1115g00001 ATGTTAGGAAGTTCTTCATCATTTCCAGTCTCTACTTCTACCACCAGATATCATGTGTTTCTCAGCTTCAGAGGAGAAGACACGCGTAAAAACTTCATCAGTCACCTTTATGCAGCACTGCAAAGGAAACGCATCCAAGCATATATTGATGAGAGAGCACAAAAGGGCGAAGAAATTTCGCCTGCACTCCAAACTGCGATAGAAGAATCAAAGATCTATGTCCTGGTTTTCTCCGAAAACTATGCATCTTCCACGTGGTGCTTGAAGGAACTGACTATGATACTGAACTGCAAGAAGAGATATGGAAGGGACGTGATACCGGTTTTCTACAAAGTGGATCCATCAACTGTCAGGAAGCAGGAAGAAAGATACAAAGAAGCATTCGAAGAGCATGAACAGCTGTTTAAGGACGACATGGAGAAAGTGCAAGGATGGAAGGATGCTCTAACCGAAGCTGCTGGACTCTCCGGTTGGGATTCAAACGTTATCAGGTCAGAAAACACACTTGTTGAAGGAATTGTGGAAGATATTATGAGAAAATTGAATCTTTATTCCATTAGTTATGATCCAGGAACTATCGGCATTGAAAAACATATTGAAAGCATTCAGTTATTGATGCATTTTGAGTCATCAGATATTCGGATCATAGGAATTTGGGGCATGGGAGGAATAGGAAAAACTACAATTTCTGAACAAATATATCACACATTTACAATGCAATTTGATTCCAGAAGCCTTGTTTTAGACACTCAAGAAAAAATAAAAAGAGATGGAATAGACGCTGTCAGAAAAAAATATATGCCCGAGCTTCTAAATGAAGTACCATCCCTCAAAGGAATGAGGATTCTCATCATTCTTGATGATGTTACTGATTCGGTTCAACTTAAACAATTGCTAGGAAGGTGTGATAGTTTTGGACAAGGCAGTAGAATCATTATAACCAGTAGAGACAAACAAGTGTTAAAGAATGCTGGAGCTGATGACATCTAA 990 0.3919 MLGSSSSFPVSTSTTRYHVFLSFRGEDTRKNFISHLYAALQRKRIQAYIDERAQKGEEISPALQTAIEESKIYVLVFSENYASSTWCLKELTMILNCKKRYGRDVIPVFYKVDPSTVRKQEERYKEAFEEHEQLFKDDMEKVQGWKDALTEAAGLSGWDSNVIRSENTLVEGIVEDIMRKLNLYSISYDPGTIGIEKHIESIQLLMHFESSDIRIIGIWGMGGIGKTTISEQIYHTFTMQFDSRSLVLDTQEKIKRDGIDAVRKKYMPELLNEVPSLKGMRILIILDDVTDSVQLKQLLGRCDSFGQGSRIIITSRDKQVLKNAGADDI 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1115g00001 329 Gene3D - 188 328 IPR027417 -
Vium1115g00001 329 SMART till_3 16 155 IPR000157 GO:0007165
Vium1115g00001 329 Coils Coil 117 137 - -
Vium1115g00001 329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 326 IPR027417 -
Vium1115g00001 329 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Vium1115g00001 329 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 158 IPR035897 -
Vium1115g00001 329 Gene3D - 14 187 IPR035897 -
Vium1115g00001 329 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 183 - -
Vium1115g00001 329 Pfam NB-ARC domain 197 326 IPR002182 GO:0043531
Vium1115g00001 329 PRINTS Disease resistance protein signature 215 230 - -
Vium1115g00001 329 PRINTS Disease resistance protein signature 276 290 - -
Vium1115g00001 329 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 322 IPR044974 GO:0006952
Vium1115g00001 329 Pfam TIR domain 17 184 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1115g00001 Vium-Chr1115 3159 4513 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1115g00001 6 321 WRKY Transcription Factor Family AT4G12020 30.931 1.14e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1115g00001 - - vum:124825007 635.18