Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11158g00001 ATGGAAAGCAGAGTGGTATTTGAGAGTGATCTGAACCTCAAGGCAACAGAACTTAGATTAGGGTTGCCAGGGACAGAGGAAAAGGAAGACAAGAACCTGCGTACACATATGCTGTTCTTAGAAGAAAAACAACAAAAGACAAGTGCCGTGAAAACTTCTCAAGACTCCATTTCCATTTCCAATTGCCCAATGACTTCACATCAACCAACCAACACGGCAAAGATAGTGGGGTGGCCACCAATCAGATCCTACAGGAAGAACAGTGTGCAGGAGGGCGAGGGGGATGGGATCTTTGTGAAAGTGAGCTTGGATGGAGCACCTTACCTCAGAAAAATTGACTTGAAAGTCTACAGGGGTTATCCAGAACTACTCAAAGCTTTAGAAACCATGTTCAAGTTGGCCATAGGTGAGTACTCTGAAAGAGAGGGTTATAAGGGGTCTGAATATGCTCCTACGTATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTGACTTCTTGCAAAAGGTAA 531 0.4463 MESRVVFESDLNLKATELRLGLPGTEEKEDKNLRTHMLFLEEKQQKTSAVKTSQDSISISNCPMTSHQPTNTAKIVGWPPIRSYRKNSVQEGEGDGIFVKVSLDGAPYLRKIDLKVYRGYPELLKALETMFKLAIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMLTSCKR 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11158g00001 176 SUPERFAMILY CAD & PB1 domains 86 174 - -
Vium11158g00001 176 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 176 IPR003311 GO:0005634|GO:0006355
Vium11158g00001 176 ProSiteProfiles PB1 domain profile. 96 176 IPR000270 GO:0005515
Vium11158g00001 176 Gene3D - 91 176 - -
Vium11158g00001 176 Pfam AUX/IAA family 48 176 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11158g00001 Vium-Chr11158 6555 7800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11158g00001 99 175 B3 DNA Binding Superfamily AT2G46530 40.260 6.82e-10 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vium11158g00001 AUX_IAA 1.6e-38 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11158g00001 K14484 - gmx:100800212 253.832