Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1114g00001 ATGGCAGAGGAGTTGATTCTGTTGGATGACTGGCTGAGTATGTACGGCATGAGAGCAAGGATAGCACTTGCAGAGAAGGAGATAAAGTATGAATACAGAGAAGAGGATCTGGGAAACAAGACCCAACTGCTTCTGCAAATGAACCCAATTCACAAGAAGATTCCAGTTCTCATCCACAGTGGTAAACCCATCTGTGAGTCCATCATTATTGTTGAGTATATTGATGAGCTTTGGAAGAACAAAGGCTCTTTCTTACCCTCAGATCCTTACGAGAGAGCTCAGGCCAGGTTCTGGGCTGATTTTGTCAACAAAAAGATAGGTGATGTTGGGTGGAGGATATGGGCAGGAAAGAGAGAAGGGATTGAAGAGGCAAAGAAAGAGTTTGTGGAGGCCTTAAAGGAACTGGAGAAGGAGCTTGGAGAGAAGGCTTACTTTGGGGGAGACACATTTGGATTTGTTGACATTGCTCTCATCTCTTTCTCCACCTGGTTTTACACTTTTGAGGCATTGGGGAATTTCAAACTGAAGACAGAGTCTCCTAAGATCATTGCTTGGGCTGAGAGATGCAATCAGAGGGAAAGTGTTTCCAAATCTCTTGCTCCTGAGAAGGACGTCTATGACTTTGTTCTAAGCTACAGACAGAGCCATCACTTGGACTAA 660 0.4439 MAEELILLDDWLSMYGMRARIALAEKEIKYEYREEDLGNKTQLLLQMNPIHKKIPVLIHSGKPICESIIIVEYIDELWKNKGSFLPSDPYERAQARFWADFVNKKIGDVGWRIWAGKREGIEEAKKEFVEALKELEKELGEKAYFGGDTFGFVDIALISFSTWFYTFEALGNFKLKTESPKIIAWAERCNQRESVSKSLAPEKDVYDFVLSYRQSHHLD 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1114g00001 219 Gene3D Glutaredoxin 1 87 - -
Vium1114g00001 219 Pfam Glutathione S-transferase, N-terminal domain 5 76 IPR004045 -
Vium1114g00001 219 Coils Coil 118 141 - -
Vium1114g00001 219 Pfam Glutathione S-transferase, C-terminal domain 120 188 - -
Vium1114g00001 219 SFLD Main (cytGST) 2 216 - -
Vium1114g00001 219 CDD GST_N_Tau 5 78 - -
Vium1114g00001 219 SUPERFAMILY GST C-terminal domain-like 76 215 IPR036282 -
Vium1114g00001 219 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 208 IPR010987 -
Vium1114g00001 219 FunFam Tau class glutathione S-transferase 1 87 - -
Vium1114g00001 219 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Vium1114g00001 219 FunFam Glutathione S-transferase U20 88 219 - -
Vium1114g00001 219 SFLD Main.3: Omega- and Tau-like 2 216 IPR045073 -
Vium1114g00001 219 Gene3D - 88 219 - -
Vium1114g00001 219 CDD GST_C_Tau 89 212 IPR045074 GO:0004364|GO:0006749
Vium1114g00001 219 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 203 IPR045073 -
Vium1114g00001 219 SUPERFAMILY Thioredoxin-like 6 106 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1114g00001 Vium-Chr1114 7999 9203 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1114g00001 1 216 Glutathione S-transferase Gene Family AT1G78370 59.722 2.20e-98 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1114g00001 K00799 - mnt:21386514 288.115