Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11147g00005 ATGAACGAGTACAGGATTGATTGTGTTGGACGGATTCAACAAAGCTATGGTCTAAATGGGGATTTGAGTTCAGAGTTTGGCAATTGTTCTAGTCAATGTTTTGATATAATACAGGCTTCACATATGGGAACTTGCAATCAGCCACTTGCTATGGCCAGTGGTGGATTTGAAGAGGAACCACACATAGGCCAAACCAAATCATCTAGCAGCATTATAAGCCGTTTTGAATCACCAGCTTCAGCCTTTTATGCAACAGAAATCTGCATGGGATTCCCACAATATGATAGACTAGTTGGTAACCCCTCTTTGATATCTCAATTCTCTAAGATCAGTGATGCGGAATTCCCTTTGTATCAATCTCCAAGGCAAAACCATTTCTTGGCTTCATTGGCAAACCAACCTGCCCCTAACTTTGAGTTGTCAAATCCCTTGCAAGCAATGCTCTTATCCCATGTGAATAGCGATCAATGTGTTAGATCTCCTGAAAAGTCTAATAAAATCTCATCTGGGAATTTCCCTGGCAGCAGTTTTCTTCCAATTGAACAACCCAAGTTGTTCATTGATGATGCTTCAAGCCCTTCGGTTCCTTGTATAGGAAATCAGGATCAAAGAGATTGTTGTGGCTCATACAATTTACCTGCTGCACAGATTAGCTTCTCTTCTCAGCAAGAGATGCTGTCACCAACACTCTCAGCAGGTAGTTTGCTAACTTCTTCTGGAAACTCTTCTTCAAATGGACCAGTAGTCTCAAGTAAAACAAGAATAAGATGGACTCAGGAACTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGTGCTGAGAAAGCAACGCCAAAAGCTATATTAAGGCTGATGGAATCAGATGGATTGACCATTTTCCATGTCAAAAGTCATCTGCAGAAATATAGAATTGCCAAATACATGCCACAATCAACTCAAGGGAAATCTGAGAAAAGAACCAATGTAGAGAATGTGCATCTTGATGCCAAAACTGGCCTGCAAATTAGAGAGGCTCTTCAGTTGCAGCTAGATGTTCAGAGGCGCCTTCATGAACAACTAGAGATTCAGAGAAAACTACAGTTAAGGATTGAGGAACAAGGTAAGCAGCTGAAAATGATGTTTGACCAACAGCAGAAGACAAGTGACAGCAACTTGAGTACTCTGAATTTGGGCAATACAACTAATAATGATAGACCTATTAGTTCTAAAGATGTTCAGGTTTCAGTTTCCGAAGGGTCTAAAAGATTACTTATTCCTTCCAACATAACTTAG 1278 0.4053 MNEYRIDCVGRIQQSYGLNGDLSSEFGNCSSQCFDIIQASHMGTCNQPLAMASGGFEEEPHIGQTKSSSSIISRFESPASAFYATEICMGFPQYDRLVGNPSLISQFSKISDAEFPLYQSPRQNHFLASLANQPAPNFELSNPLQAMLLSHVNSDQCVRSPEKSNKISSGNFPGSSFLPIEQPKLFIDDASSPSVPCIGNQDQRDCCGSYNLPAAQISFSSQQEMLSPTLSAGSLLTSSGNSSSNGPVVSSKTRIRWTQELHEKFVECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRIAKYMPQSTQGKSEKRTNVENVHLDAKTGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTSDSNLSTLNLGNTTNNDRPISSKDVQVSVSEGSKRLLIPSNIT 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11147g00005 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 251 309 IPR017930 -
Vium11147g00005 425 Pfam Myb-like DNA-binding domain 256 305 IPR001005 -
Vium11147g00005 425 Pfam MYB-CC type transfactor, LHEQLE motif 335 382 IPR025756 -
Vium11147g00005 425 SUPERFAMILY Homeodomain-like 250 306 IPR009057 -
Vium11147g00005 425 Coils Coil 338 358 - -
Vium11147g00005 425 FunFam Myb family transcription factor 251 309 - -
Vium11147g00005 425 NCBIfam myb-like DNA-binding domain, SHAQKYF class 252 307 IPR006447 GO:0003677
Vium11147g00005 425 Gene3D - 251 310 - -
Vium11147g00005 425 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 232 399 IPR044848 GO:0003700
Vium11147g00005 425 MobiDBLite consensus disorder prediction 379 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11147g00005 Vium-Chr11147 10951 14227 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11147g00005 242 379 G2-like Transcription Factor Family AT4G28610 59.574 4.25e-50 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium11147g00005 Myb_DNA-binding 4.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11147g00005 - - gmx:102668541 613.224