Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11147g00004 ATGAACGAGTACAGGATTGATTGTGTTGGACGGATTCAACAAAGCTATGGTCTAAATGGGGATTTGAGTTCAGAGTTTGGCAATTGTTCTAGTCAATGTTTTGATATAATACAGGCTTCACATATGGGAACTTGCAATCAGCCACTTGCTATGGCCAGTGGTGGATTTGAAGAGGAACCACACATAGGCCAAACCAAATCATCTAGCAGCATTATAAGCCGTTTTGAATCACCAGCTTCAGCCTTTTATGCAACAGAAATCTGCATGGGATTCCCACAATATGATAGACTAGTTGGTAACCCCTCTTTGATATCTCAATTCTCTAAGATCAGTGATGCGGAATTCCCTTTGTATCAATCTCCAAGGCAAAACCATTTCTTGGCTTCATTGGCAAACCAACCTGCCCCTAACTTTGAGTTGTCAAATCCCTTGCAAGCAATGCTCTTATCCCATGTGAATAGCGATCAATGTGTTAGATCTCCTGAAAAGTCTAATAAAATCTCATCTGGGAATTTCCCTGGCAGCAGTTTTCTTCCAATTGAACAACCCAAGTTGTTCATTGATGATGCTTCAAGCCCTTCGGTTCCTTGTATAGGAAATCAGGATCAAAGAATTAGCTTCTCTTCTCAGCAAGAGATGCTGTCACCAACACTCTCAGCAGGTAGTTTGCTAACTTCTTCTGGAAACTCTTCTTCAAATGGACCAGTAGTCTCAAGTAAAACAAGAATAAGATGGACTCAGGAACTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGTGCTGAGAAAGCAACGCCAAAAGCTATATTAAGGCTGATGGAATCAGATGGATTGACCATTTTCCATGTCAAAAGTCATCTGCAGAAATATAGAATTGCCAAATACATGCCACAATCAACTCAAGGGAAATCTGAGAAAAGAACCAATGTAGAGAATGTGCATCTTGATGCCAAAACTGGCCTGCAAATTAGAGAGGCTCTTCAGTTGCAGCTAGATGTTCAGAGGCGCCTTCATGAACAACTAGAGATTCAGAGAAAACTACAGTTAAGGATTGAGGAACAAGGTAAGCAGCTGAAAATGATGTTTGACCAACAGCAGAAGACAAGTGACAGCAACTTGAGTACTCTGAATTTGGGCAATACAACTAATAATGATAGACCTATTAGTTCTAAAGATGTTCAGGTTTCAGTTTCCGAAGGGTCTAAAAGATTACTTATTCCTTCCAACATAACTTAG 1242 0.4042 MNEYRIDCVGRIQQSYGLNGDLSSEFGNCSSQCFDIIQASHMGTCNQPLAMASGGFEEEPHIGQTKSSSSIISRFESPASAFYATEICMGFPQYDRLVGNPSLISQFSKISDAEFPLYQSPRQNHFLASLANQPAPNFELSNPLQAMLLSHVNSDQCVRSPEKSNKISSGNFPGSSFLPIEQPKLFIDDASSPSVPCIGNQDQRISFSSQQEMLSPTLSAGSLLTSSGNSSSNGPVVSSKTRIRWTQELHEKFVECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRIAKYMPQSTQGKSEKRTNVENVHLDAKTGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTSDSNLSTLNLGNTTNNDRPISSKDVQVSVSEGSKRLLIPSNIT 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11147g00004 413 Coils Coil 326 346 - -
Vium11147g00004 413 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 220 387 IPR044848 GO:0003700
Vium11147g00004 413 Gene3D - 239 298 - -
Vium11147g00004 413 MobiDBLite consensus disorder prediction 220 239 - -
Vium11147g00004 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 239 297 IPR017930 -
Vium11147g00004 413 NCBIfam myb-like DNA-binding domain, SHAQKYF class 240 295 IPR006447 GO:0003677
Vium11147g00004 413 Pfam Myb-like DNA-binding domain 244 293 IPR001005 -
Vium11147g00004 413 MobiDBLite consensus disorder prediction 367 396 - -
Vium11147g00004 413 FunFam Myb family transcription factor 239 297 - -
Vium11147g00004 413 Pfam MYB-CC type transfactor, LHEQLE motif 323 370 IPR025756 -
Vium11147g00004 413 SUPERFAMILY Homeodomain-like 238 294 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11147g00004 Vium-Chr11147 10951 14227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11147g00004 230 367 G2-like Transcription Factor Family AT4G28610 59.574 3.50e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium11147g00004 Myb_DNA-binding 4.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11147g00004 - - gmx:102668541 589.726